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Table 4 Shared private runs of homozygosity (ROH) in 50-SNP windows

From: Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses

ECA Position Number of SNPs in shared parts of ROH regions Size of shared ROH (bp) Gene ID Human ortholog Gene name/function
1 135530600-135573693 192 43094 ENSECAG00000010951, ENSECAG00000001112, ENSECAG00000004438, ENSECAG00000001272 DYX1C1, novel gene, novel gene, novel gene dyslexia susceptibility 1 candidate 1
4 13434735-13434933 17 199 - - -
4 16813531-16813643 4 113 - - -
4 48740665-48745235 7 4571 - - -
6 70162066-70181092 35 19027 ENSECAG00000006878 CSAD cysteine sulfinic acid decarboxylase
6 80540783-80586091 227 45309 ENSECAG00000024798 TBC1D30 TBC1 domain family, member 30
6 81785611-81786700 28 1090 - - -
8 50498336-50582995 392 84660 - - -
12 9146140-9204195 70 58056 ENSECAG00000019892 ALX4 ALX homeobox 4
14 30412967-30412967 1 1 - - -
14 85610289-85611904 69 1616 - - -
15 5973552-5973559 3 8 - - -
15 79802636-79806388 119 3753 - - -
16 23766626-23821105 311 54480 ENSECAG00000002081 novel gene  
22 4841367-4841408 3 42 ENSECAG00000004364 CFAP61 cilia and flagella associated protein 61
22 16310734-16310750 3 17 - - -
28 39200676-39218496 29 17821 - - -
31 16634998-16711978 347 76981 ENSECAG00000023857 PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C
  1. The consensus ROH regions and genes in private ROH regions shared in four Hanoverian are shown. The number of SNPs and size of shared ROH indicate the overlap of homozygous variants