Patient | Sample | Total n° Reads | High Quality Bases (n°) | % Trimmed Bases | Unique Reads (n°) | % PCR duplicate | n° Mapped Reads | % Mapped Reads |
---|---|---|---|---|---|---|---|---|
GIST193 | FF | 63,523,138 | 5.84E + 09 | 8.1 % | 58,598,506 | 7.8 % | 57,879,604 | 98.8 % |
FFPE | 54,852,570 | 4.97E + 09 | 9.4 % | 49,208,829 | 10.3 % | 48,499,561 | 98.6 % | |
PB | 42,361,296 | 3.80E + 09 | 10.3 % | 39,964,111 | 5.7 % | 39,385,105 | 98.6 % | |
GIST165 | FF | 53,644,770 | 4.95E + 09 | 7.7 % | 49,587,098 | 7.6 % | 49,019,552 | 98.9 % |
FFPE | 50,570,884 | 4.59E + 09 | 9.3 % | 45,332,397 | 10.4 % | 44,682,820 | 98.6 % | |
PB | 42,235,292 | 3.87E + 09 | 8.3 % | 39,957,754 | 5.4 % | 39,460,107 | 98.8 % | |
GIST174 | FF | 56,267,604 | 5.10E + 09 | 9.3 % | 52,033,110 | 7.5 % | 51,338,819 | 98.7 % |
FFPE | 64,625,134 | 5.87E + 09 | 9.2 % | 58,169,850 | 10.0 % | 57,529,198 | 98.9 % | |
PB | 52,136,904 | 4.69E + 09 | 10.0 % | 48,822,001 | 6.4 % | 48,110,730 | 98.5 % | |
GIST127 | FF | 48,223,180 | 4.42E + 09 | 8.4 % | 44,804,080 | 7.1 % | 44,294,468 | 98.9 % |
FFPE | 14,203,932 | 1.14E + 09 | 20.7 % | 12,496,962 | 12.0 % | 12,310,812 | 98.1 % | |
PB | 43,078,472 | 3.86E + 09 | 10.4 % | 40,476,585 | 6.0 % | 39,924,959 | 98.4 % |