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Table 2 Protein, gene model or transcript IDs for the genes involved in meiosis analyzed in this study

From: Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta

Protein name Accession numbers of proteins used as query Thalassiosira pseudonana protein ID Phaeodactylum tricornutum protein ID Fragilariopsis cylindrus protein ID Pseudo-nitzschia multiseries protein ID Pseudo-nitzschia multistriata gene model ID Seminavis robusta Transcript ID
DNA replication and chromosome maintenance
 Mcm2 NP_001185154.1 29936 18622 204899 209470 0061270.1 Semro_comp78811_c0_seq1
 Mcm3 Q9FL33.1 34975 51597 264318 318351 0004850.1 Semro_comp50104_c0_seq1
 Mcm4 NP_179236.3 269123 51412 146869 203268 0078600.1b Semro_comp82592_c0_seq1
 Mcm5 NP_001189521.1 31609 11490 224321 255529 0118810.1 Semro_comp83065_c1_seq1
 Mcm6 AED95141.1 26545 468 193082 321321 0022580.1 Semro_comp61600_c0_seq1
 Mcm7 P43299.2 262526 13243 184349 243980 0109820.1 Semro_comp70058_c0_seq2
 Mcm8 NP_187577.1 261512 52561 189062 213178 0068370.1 Semro_comp79168_c0_seq3
 Mcm9 NP_179021.3 37362 981 156569 183315 0056900.1 Semro_comp59174_c0_seq1
 Smc1 AEE79265.1 35499 25506 212269 162817 0116990.1 Semro_comp83927_c0_seq1
 Smc2 NP_201047.1 1393 30352 210755 191984 0096310.1 Semro_comp61213_c0_seq1
 Smc3 NP_180285.4 259020 52607 208027 251818 0079810.1 Semro_comp78328_c0_seq1
 Smc4 AED95695.1 42365 44165 212991 144962 0030660.1 Semro_comp76089_c0_seq1
 Smc5 AED92224.1 9851 54192 193562 286374 0102810.1 Semro_comp64598_c0_seq1
 Smc6 NP_196383.1 1743 36853 177172 165557 0090050.1 Semro_comp65344_c0_seq1
 Pds5 NP_177883.5 5929 1590 136077 203285 0089060.1 Semro_comp82484_c0_seq6
 Scc3 AEC10920.1 8747 51870 234878 38865 0079350.1 Semro_comp20575_c0_seq1
 Rec8/Syn1a NP_196168.1 NF NF NF NF NF NF
 Rad21 NP_851110.1 8557 44595 245879 324402 0072170.1 Semro_comp80503_c0_seq6
Double-strand break formation
 Spo11-1a AEE75304.1 NF NF NF NF NF NF
 Spo11-2a AEE34178.1 263510 36531 242364 156625 0108120.1b Semro_comp74200_c0_seq1
 Spo11-3/Top VIA NP_195902.1 42646 24838 239125 251788 0081370.1 Semro_comp59497_c0_seq2
DNA damage sensing and response
 Rad50 AEC08614.1 9195 51876 243939 320939 0001820.1 Semro_comp61512_c0_seq1
 Mre11 NP_200237.1 34332 54699 275781 233741 0086370.1 Semro_comp82091_c0_seq3
 Xrs2/Nbs1 ABA54896.1 NF NF NF NF NF NF
Crossover regulation
 Mer3a AAX14498.1 11979 39994 239915 285411 0087420.1 Semro_comp60890_c0_seq1
 Hop1/Asy1a AEE34638.1 NF NF NF NF NF NF
 Red1/Asy3a AEC10782.1 NF NF NF NF NF NF
 Zip1/Zyp1a AEE30217.1 NF NF NF NF NF NF
 Zip2a NP_011265.1 NF NF NF NF NF NF
 Zip3/Hei10a NP_175754.2 NF NF NF NF NF NF
 Zip4a ABO71664.1 NF NF NF NF NF NF
 Dmc1a AAC49617.1 NF NF NF NF NF NF
 Hop2a CAF28783.1 NF NF NF NF NF NF
 Mnd1a NP_194646.2 25513 54296 273989 295346 0080640.1 Semro_comp20014_c0_seq1
 Msh4a AAT70180.1 261368 51916 144820 259109 0116300.1b Semro_comp57561_c0_seq2
 Msh5a NP_188683.3 16039 52173 149505 183820 0023810.1 Semro_comp80580_c0_seq6
Double-strand break repair (recombinational repair)
 Rad51-A BAE99388.1 261303 51999 165795 (A1) 197408 (A2) 212272 (A1) 1352 (A2) 0056780.1 (A1) 0086180.1 (A2) Semro_comp76648_c0_seq1
 Rad51-B NP_180423.3 261577 40092 241710 325273 0105810.1 Semro_comp71219_c0_seq1
 Rad51-C CAC14091.1 257784b 54137 201530 29459 0104040.1 Semro_comp71710_c0_seq3
 Rad51-D NP_001077479.1 NF NF NF NF NF NF
 Xrcc2 NP_201257.2 NF NF NF NF NF NF
 Xrcc3 NP_200554.1 2081c 31781 242664c 292867c comp26486_c0_seq1c Semro_comp70556_c0_seq2c
 Rec-A BAE99388.1 267595 51425 186275 166360 0063260.1 Semro_comp77000_c0_seq1
 Rad52 CAA86623.1 25447 49083 238228 50181 0088620.1 Semro_comp79910_c0_seq1
 Rad1 Q9LKI5.2 22869 30908 208467 230429 0074360.1b Semro_comp82187_c0_seq2
 Msh2 AEE76112.1 32661 19604 159571 153636 0083140.1 Semro_comp80478_c0_seq1
 Msh6 NP_001190656.1 261781 53969 212924 190397 0084190.1 Semro_comp80580_c0_seq6
 Mlh1 NP_567345.2 263509 54331 136590 257081 0125040.1 Semro_comp75421_c0_seq1
 Mlh2 NP 013135.1 NF NF NF NF NF NF
 Mlh3 NP_195277.5 NF NF NF NF NF NF
 Pms1 AAM00563.1 264783 14607 248102 242883 0117080.1 Semro_comp73186_c0_seq1
 Mms4/Eme1 AAF06816.1 NF NF NF NF NF NF
 Mus81 NP_194816.2 NF 36625 241086 63674 0100930.1b Semro_comp84506_c0_seq2
 Fancm NP_001185141.1 11922 47619 248113 68428 0010100.1 Semro_comp74927_c0_seq1c
Accessory proteins required during meiosis
 Fen1 AED93576.1 269347 48638 206746 260195 0006800.1 Semro_comp51200_c0_seq1
 Exo1 Q8L6Z7.2 4742 48206 261553 110816 0067080.1 Semro_comp61722_c0_seq1
 Dna2 NP_001184943.1 10652 35426 241656 326992 0027070.1 Semro_comp83726_c0_seq1
 Brca1 AAO39850.1 NF NF NF NF NF NF
 Brca2 AEE81814.1 6763 36784 253990 284242 0067160.1 Semro_comp82255_c0_seq4
  1. Genes marked with a are genes that do not have known functions outside meiosis. Arabidopsis thaliana meiotic proteins were used as query sequence; whenever the specific query gene was not found/present in A. thaliana, Saccharomyces cerevisiae proteins were used (accession numbers in bold). Protein IDs are given for the diatom genomes available at the JGI portal, gene models IDs are given for the Pseudo-nitzschia multistriata genome and transcripts IDs for Seminavis robusta. Actual gene model IDs for P. multistriata include the prefix PSNMU-V1.4_AUG-EV-PASAV3
  2. bcorrected gene model, NF not found, cgene model might need validation