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Table 2 Overlapping regions of Chinese Merino BACs in a telomeric to centromeric (5′ to 3′) orientation

From: A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region

BAC IDs

3′ Loc

5′ Loc

69rc x 54rc

124243–134643

1–10399

54rc x 64rc

140977–145292

765–5061a

64rc x 70

-

-

64rc x 73

-

-

70 x 73

26368–142360

1–116126

73 x 68rc

179850–196844

1–16758

68rc x 52rc

94483–140835

1–46198

68rc x 75rc

105191–140835

1–35324

52rc x 75rc

10710–118738

1–108231

75rc x 59rc

-

-

59rc x 74

142004–160643

1–18619

74 x 56

121429–141902

1–20418

56 x 61

115294–127050

1–11759

61 x 72rc

134589–162317

1–27705

72rc x 57rc

114820–169910

1–55107

57rc x 53

130181–16553

1–35410

53 x 67rc

118698–134434

1–15709

67rc x 62rc

-

-

62rc x 66rc

74418–167309

1–94777

66rc x 76rc

125570–155022

1–29542

76rc x 65rc

-

-

  1. Precede BAC ID numerals with ‘FJ9858’ to determine NCBI GenBank accession. Appended ‘rc’ indicates the BAC was reverse complemented before alignment. ‘-‘ indicates there was no overlap identified. aFirst 765 bp of GenBank: FJ985864rc do not overlap with GenBank: FJ985854rc, this is most likely due to contig misassembly in this region