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Table 2 Overlapping regions of Chinese Merino BACs in a telomeric to centromeric (5′ to 3′) orientation

From: A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region

BAC IDs 3′ Loc 5′ Loc
69rc x 54rc 124243–134643 1–10399
54rc x 64rc 140977–145292 765–5061a
64rc x 70 - -
64rc x 73 - -
70 x 73 26368–142360 1–116126
73 x 68rc 179850–196844 1–16758
68rc x 52rc 94483–140835 1–46198
68rc x 75rc 105191–140835 1–35324
52rc x 75rc 10710–118738 1–108231
75rc x 59rc - -
59rc x 74 142004–160643 1–18619
74 x 56 121429–141902 1–20418
56 x 61 115294–127050 1–11759
61 x 72rc 134589–162317 1–27705
72rc x 57rc 114820–169910 1–55107
57rc x 53 130181–16553 1–35410
53 x 67rc 118698–134434 1–15709
67rc x 62rc - -
62rc x 66rc 74418–167309 1–94777
66rc x 76rc 125570–155022 1–29542
76rc x 65rc - -
  1. Precede BAC ID numerals with ‘FJ9858’ to determine NCBI GenBank accession. Appended ‘rc’ indicates the BAC was reverse complemented before alignment. ‘-‘ indicates there was no overlap identified. aFirst 765 bp of GenBank: FJ985864rc do not overlap with GenBank: FJ985854rc, this is most likely due to contig misassembly in this region