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Table 5 BLAST analysis of CHORI BAC end sequences available in GenBank. The sequences were aligned with cattle and sheep reference sequences from chromosome 20 and 23, respectively, and with the Chinese Merino BAC sequences

From: A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region

BAC ID BAC end sequence GenBank ID Location within GenBank: AC_000180 (Cattle) Location within GenBank: NC_019477 (Sheep) Location within Chinese Merino BACs
CH243- GenBank: DU202647.1 28318396–28318799 Between LOC512672 and LOC101905956 27582535–27582944 Between LOC101107908 and LOC101108171 No significant similarity found
390H16  
GenBank: DU201205.1 28104186–28104742 Tubulin, beta 2B (TUBB) 27366724–27367274 Tubulin, beta 2A (TUBB2A) FJ985873 178105–178656 Beta tubulin (TUBB)
CH243- GenBank: DU252291.1 28268052–28268910 Tripartite motif-containing 39 (TRIM39) 27538705–27539533 LOC101106373 FJ985873 16302–17130 Tripartite motif-containing 39 (TRIM 39)
454E19
GenBank: DU262410.1 28071261–28072253 Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3) 27332144–27332884 Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3) FJ985868RC 32632–33370 Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3)
CH243- GenBank: DU418632.1 27849059–27849865 Between LOC616942 and BOLA (both MHC class I-like) 26997887–26998048 Between LOC101105609 and LOC101107641 (both MHC class I-like) FJ985859RC 18419–19215 Between MHC class I and MHC class I-like
269 M18
GenBank: DU420388.1 27697572–27698209 Between LOC788634 and BOLA (both MHC class I-like) 26982178–26982955 Within MHC class1-like FJ985859RC 157679–158508 Between MHC class I-like genes
FJ985874 15655–16484 Between MHC class I-like genes