Table 5 BLAST analysis of CHORI BAC end sequences available in GenBank. The sequences were aligned with cattle and sheep reference sequences from chromosome 20 and 23, respectively, and with the Chinese Merino BAC sequences
From: A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region
BAC ID | BAC end sequence GenBank ID | Location within GenBank: AC_000180 (Cattle) | Location within GenBank: NC_019477 (Sheep) | Location within Chinese Merino BACs | ||||
|---|---|---|---|---|---|---|---|---|
CH243- | GenBank: DU202647.1 | 28318396–28318799 | Between LOC512672 and LOC101905956 | 27582535–27582944 | Between LOC101107908 and LOC101108171 | No significant similarity found | ||
390H16 | Â | |||||||
GenBank: DU201205.1 | 28104186–28104742 | Tubulin, beta 2B (TUBB) | 27366724–27367274 | Tubulin, beta 2A (TUBB2A) | FJ985873 | 178105–178656 | Beta tubulin (TUBB) | |
CH243- | GenBank: DU252291.1 | 28268052–28268910 | Tripartite motif-containing 39 (TRIM39) | 27538705–27539533 | LOC101106373 | FJ985873 | 16302–17130 | Tripartite motif-containing 39 (TRIM 39) |
454E19 | ||||||||
GenBank: DU262410.1 | 28071261–28072253 | Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3) | 27332144–27332884 | Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3) | FJ985868RC | 32632–33370 | Between discoidin domain receptor family, member 1 (DDR1) and immediate early response 3 (IER3) | |
CH243- | GenBank: DU418632.1 | 27849059–27849865 | Between LOC616942 and BOLA (both MHC class I-like) | 26997887–26998048 | Between LOC101105609 and LOC101107641 (both MHC class I-like) | FJ985859RC | 18419–19215 | Between MHC class I and MHC class I-like |
269Â M18 | ||||||||
GenBank: DU420388.1 | 27697572–27698209 | Between LOC788634 and BOLA (both MHC class I-like) | 26982178–26982955 | Within MHC class1-like | FJ985859RC | 157679–158508 | Between MHC class I-like genes | |
FJ985874 | 15655–16484 | Between MHC class I-like genes | ||||||