Table 3 Novel non-coding small RNAs in B. cenocepacia J2315 with hits in Rfam database
From: Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315
Preliminary name | Strand | Length (nt)b | Terminator sequence | Adjacent genes | Relative orientation | Genome position | Rfam ID | Name | |
|---|---|---|---|---|---|---|---|---|---|
ncS03 | + | 58 | yes | BCAL0197 | BCAL0198 | → → ← | 221314..221371 | RF02278 | Toxic small RNA |
ncS05 | - | 67 | yes | BCAL0436 | BCAL0437 | ← ← → | Complement (479440..479506) | RF02278 | Toxic small RNA |
ncS17 | + | 200 | yes | BCAL2667 | BCAL2668 | → → → | 2935785..2935984 | RF00013 | 6S RNA |
ncS23 | + | 81 | yes | BCAL2965 | BCAL2965a | → → → | 3246834..3246914 | RF01394 | isrK |
ncS24 | + | 90 | no | BCAL2965 | BCAL2965a | → → → | 3246937..3247026 | RF01695 | C4a |
ncS27 | - | 92 | yes | BCAL3348a | BCAL3349 | → ← → | Complement (3666557..3666648) | RF02278 | Toxic small RNA |
ncS62 | + | 57 | yes | BCAM1871 | BCAM1872 | → → ← | 2089713..2089769 | RF02278 | Toxic small RNA |
ncR1 | + | 119 | no | BCAL0144 | BCAL0145 | → → → | 168973..169091 | RF01057 | SAH riboswitch |
ncR2 | + | 118 | no | BCAL1514 | BCAL1515 | → → → | 1676458..1676575 | RF01070 | SucA RNA motif |