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Table 4 Putative novel non-coding RNAs expressed in B. cenocepacia and experimentally confirmed by previous studies

From: Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

Preliminary name Strand Length (nt)b Terminator sequence Adjacent genes Relative orientation Genome position Replicon Type of experiment
ncS04 + 105 yes BCAL0264 BCAL0265 ← → ← 292949..293053 1 Co-purification with Hfq [40]
ncS06 + 117 no BCAL0549 BCAL0550 → → ← 603652..603828 1 RNA-Seq and Northern blot [36]
ncS11 - 208 yes BCAL2293 BCAL2294 → ← ← Complement (2545296..2545503) 1 RNA-Seq [36]
ncS18 + 178 no BCAL2713 BCAL2714 → → → 2979006..2979183 1 RNA-Seq [36]
ncS21a + 361 yes BCAL2737 BCAL2738 → → → 3008232..3008591 1 RNA-Seq [36]
ncS33 + 93 no BCAM1725 BCAM1726 → → → 1926664..1926756 2 RNA-Seq [36]
ncS36 + 60 no BCAM2207 BCAM2208 ← → → 2468880..2468939 2 RNA-Seq [36]
  1. ancS21 is associated with an open reading frame and potentially constitutes a protein, see Additional file 6: Table S5
  2. bLength of non-coding RNAs is inferred from dRNA-Seq data and terminator structures (when present) and is not yet experimentally confirmed