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Table 3 Summary of samples and RNA-seq data

From: Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

Groups Total reads Clean reads Sub-genome Mapped reads Mapping ratio (%) Total mapping ratio (%) Mapped reads -u Mapping ratio (%) -u Total mapping ratio (%) -u
Wild-1 23,271,884 22,088,185 A 17,586,172 79.6 86.5 13,102,552 59.3 74.6
B 17,813,886 80.6 13,140,929 59.5
Wild-2 27,577,198 26,160,151 A 20,700,875 79.1 85.9 15,242,936 58.3 73.7
B 21,023,950 80.4 15,242,734 58.3
Cultivar-1 17,740,180 16,773,599 A 13,527,727 80.6 87.4 9,474,682 56.5 71.3
B 13,783,371 82.2 9,535,891 56.9
Cultivar-2 29,551,798 27,977,895 A 22,256,822 79.6 86.6 16,395,908 58.6 74.3
B 22,663,043 81.0 16,290,987 58.2
Landrace-1 23,082,003 21,898,663 A 16,563,967 75.6 85.3 14,141,135 64.6 83.1
B 16,971,148 77.5 14,275,683 65.2
Landrace-2 26,163,934 24,724,657 A 18,580,284 75.1 84.4 15,687,853 63.5 81.9
B 19,196,718 77.6 15,843,276 64.1
Total 147,386,997 139,623,150