Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

BMC Genomics

Table 3 Summary of samples and RNA-seq data

Groups	Total reads	Clean reads	Sub-genome	Mapped reads	Mapping ratio (%)	Total mapping ratio (%)	Mapped reads -u	Mapping ratio (%) -u	Total mapping ratio (%) -u
Wild-1	23,271,884	22,088,185	A	17,586,172	79.6	86.5	13,102,552	59.3	74.6
Wild-1	23,271,884	22,088,185	B	17,813,886	80.6	86.5	13,140,929	59.5	74.6
Wild-2	27,577,198	26,160,151	A	20,700,875	79.1	85.9	15,242,936	58.3	73.7
Wild-2	27,577,198	26,160,151	B	21,023,950	80.4	85.9	15,242,734	58.3	73.7
Cultivar-1	17,740,180	16,773,599	A	13,527,727	80.6	87.4	9,474,682	56.5	71.3
Cultivar-1	17,740,180	16,773,599	B	13,783,371	82.2	87.4	9,535,891	56.9	71.3
Cultivar-2	29,551,798	27,977,895	A	22,256,822	79.6	86.6	16,395,908	58.6	74.3
Cultivar-2	29,551,798	27,977,895	B	22,663,043	81.0	86.6	16,290,987	58.2	74.3
Landrace-1	23,082,003	21,898,663	A	16,563,967	75.6	85.3	14,141,135	64.6	83.1
Landrace-1	23,082,003	21,898,663	B	16,971,148	77.5	85.3	14,275,683	65.2	83.1
Landrace-2	26,163,934	24,724,657	A	18,580,284	75.1	84.4	15,687,853	63.5	81.9
Landrace-2	26,163,934	24,724,657	B	19,196,718	77.6	84.4	15,843,276	64.1	81.9
Total	147,386,997	139,623,150

ISSN: 1471-2164