Table 4 DEGs down-regulated in glumes of domesticated wheat compared to wild progenitor
From: Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars
id | baseMean | baseMean | baseMean | log2Fold | Padj | log2Fold | Padj | Putative annotation |
|---|---|---|---|---|---|---|---|---|
(Wild) | (Cultiviar) | (Landrace) | Change(C/W) | (C/W) | Change(L/W) | (L/W) | ||
Ta7alLoc001275.1 | 1093.35 | 416.13 | 388.49 | −1.39 | 7.96E-03 | −1.49 | 3.19E-03 | 4-coumarate:CoA ligase |
Ta1blLoc007155.1 | 5137.83 | 1403.42 | 2048.36 | −1.87 | 1.00E-05 | −1.33 | 6.17E-03 | Cellulose synthase |
Ta5alLoc000723.1 | 1933.05 | 441.04 | 647.98 | −2.13 | 7.97E-07 | −1.58 | 6.55E-04 | Cellulose synthase |
Ta3bLoc028980.1 | 4678.25 | 1223.81 | 1929.83 | −1.93 | 3.84E-04 | −1.28 | 8.50E-02 | Cellulose synthase |
Ta4alLoc006547.1 | 177.41 | 0.00 | 0.00 | -Inf | 2.47E-15 | -Inf | 1.30E-17 | CER1 protein |
Ta4alLoc026069.1 | 550.15 | 0.00 | 0.00 | -Inf | 8.29E-26 | -Inf | 4.65E-29 | CER1 protein |
Ta1alLoc003924.2 | 40.98 | 1.82 | 0.39 | −4.49 | 5.99E-02 | −6.71 | 1.80E-03 | Cinnamoyl CoA reductase |
Ta3bLoc003710.1 | 5610.65 | 1515.59 | 1849.21 | −1.89 | 0.0001 | −1.60 | 0.0016 | Fasciclin-like arabinogalactan protein 7 |
Ta3bLoc056384.1 | 25.40 | 0.00 | 0.00 | -Inf | 6.75E-02 | -Inf | 3.53E-02 | Flavonol 4-sulfotransferase |
Ta4alLoc006913.1 | 299.00 | 4.85 | 7.32 | −5.95 | 1.64E-16 | −5.35 | 1.08E-16 | Flavonol 4-sulfotransferase |
Ta5blLoc013288.1 | 944.48 | 181.67 | 269.42 | −2.38 | 1.04E-07 | −1.81 | 1.66E-04 | NAC domain-containing protein 18 |
Ta6blLoc001596.1 | 1507.23 | 377.78 | 671.34 | −2.00 | 8.20E-06 | −1.17 | 5.04E-02 | Pectin lyase-like protein |
Ta3bLoc036242.1 | 251.80 | 34.64 | 32.65 | −2.86 | 1.16E-03 | −2.95 | 1.53E-04 | Pectinacetylesterase family protein |
Ta3bLoc019897.1 | 219.61 | 36.13 | 30.72 | −2.60 | 1.40E-02 | −2.84 | 4.83E-03 | Pectinacetylesterase family protein |
Ta2blLoc014498.1 | 719.00 | 118.04 | 306.22 | −2.61 | 4.62E-08 | −1.23 | 6.04E-02 | Phenylalanine ammonia-lyase |
Ta3bLoc024051.1 | 342.10 | 34.22 | 106.23 | −3.32 | 4.41E-09 | −1.69 | 1.19E-02 | Phenylalanine ammonia-lyase |
Ta7asLoc021287.1 | 3214.99 | 932.09 | 1145.19 | −1.79 | 3.10E-02 | −1.49 | 8.21E-02 | Sucrose synthase 2, putative, expressed |
Ta6bsLoc005412.1 | 839.45 | 149.96 | 376.09 | −2.48 | 3.87E-07 | −1.16 | 8.73E-02 | Sucrose:fructan-6-fructosyltransferase |
Ta4alLoc019947.1 | 168.96 | 45.07 | 38.20 | −1.91 | 1.72E-02 | −2.14 | 5.10E-03 | Fiber protein Fb34 |
Ta7bsLoc005648.1 | 161.29 | 39.24 | 43.95 | −2.04 | 2.28E-02 | −1.88 | 3.37E-02 | TRICHOME BIREFRIGENE like 22 |
Ta4blLoc021918.2 | 235.61 | 19.18 | 49.36 | −3.62 | 4.92E-08 | −2.26 | 8.61E-04 | Laccase |
Ta4asLoc013789.1 | 939.60 | 192.99 | 304.20 | −2.28 | 5.70E-07 | −1.63 | 1.16E-03 | laccase 16 LENGTH=523 |