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Table 4 DEGs down-regulated in glumes of domesticated wheat compared to wild progenitor

From: Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

id baseMean baseMean baseMean log2Fold Padj log2Fold Padj Putative annotation
(Wild) (Cultiviar) (Landrace) Change(C/W) (C/W) Change(L/W) (L/W)
Ta7alLoc001275.1 1093.35 416.13 388.49 −1.39 7.96E-03 −1.49 3.19E-03 4-coumarate:CoA ligase
Ta1blLoc007155.1 5137.83 1403.42 2048.36 −1.87 1.00E-05 −1.33 6.17E-03 Cellulose synthase
Ta5alLoc000723.1 1933.05 441.04 647.98 −2.13 7.97E-07 −1.58 6.55E-04 Cellulose synthase
Ta3bLoc028980.1 4678.25 1223.81 1929.83 −1.93 3.84E-04 −1.28 8.50E-02 Cellulose synthase
Ta4alLoc006547.1 177.41 0.00 0.00 -Inf 2.47E-15 -Inf 1.30E-17 CER1 protein
Ta4alLoc026069.1 550.15 0.00 0.00 -Inf 8.29E-26 -Inf 4.65E-29 CER1 protein
Ta1alLoc003924.2 40.98 1.82 0.39 −4.49 5.99E-02 −6.71 1.80E-03 Cinnamoyl CoA reductase
Ta3bLoc003710.1 5610.65 1515.59 1849.21 −1.89 0.0001 −1.60 0.0016 Fasciclin-like arabinogalactan protein 7
Ta3bLoc056384.1 25.40 0.00 0.00 -Inf 6.75E-02 -Inf 3.53E-02 Flavonol 4-sulfotransferase
Ta4alLoc006913.1 299.00 4.85 7.32 −5.95 1.64E-16 −5.35 1.08E-16 Flavonol 4-sulfotransferase
Ta5blLoc013288.1 944.48 181.67 269.42 −2.38 1.04E-07 −1.81 1.66E-04 NAC domain-containing protein 18
Ta6blLoc001596.1 1507.23 377.78 671.34 −2.00 8.20E-06 −1.17 5.04E-02 Pectin lyase-like protein
Ta3bLoc036242.1 251.80 34.64 32.65 −2.86 1.16E-03 −2.95 1.53E-04 Pectinacetylesterase family protein
Ta3bLoc019897.1 219.61 36.13 30.72 −2.60 1.40E-02 −2.84 4.83E-03 Pectinacetylesterase family protein
Ta2blLoc014498.1 719.00 118.04 306.22 −2.61 4.62E-08 −1.23 6.04E-02 Phenylalanine ammonia-lyase
Ta3bLoc024051.1 342.10 34.22 106.23 −3.32 4.41E-09 −1.69 1.19E-02 Phenylalanine ammonia-lyase
Ta7asLoc021287.1 3214.99 932.09 1145.19 −1.79 3.10E-02 −1.49 8.21E-02 Sucrose synthase 2, putative, expressed
Ta6bsLoc005412.1 839.45 149.96 376.09 −2.48 3.87E-07 −1.16 8.73E-02 Sucrose:fructan-6-fructosyltransferase
Ta4alLoc019947.1 168.96 45.07 38.20 −1.91 1.72E-02 −2.14 5.10E-03 Fiber protein Fb34
Ta7bsLoc005648.1 161.29 39.24 43.95 −2.04 2.28E-02 −1.88 3.37E-02 TRICHOME BIREFRIGENE like 22
Ta4blLoc021918.2 235.61 19.18 49.36 −3.62 4.92E-08 −2.26 8.61E-04 Laccase
Ta4asLoc013789.1 939.60 192.99 304.20 −2.28 5.70E-07 −1.63 1.16E-03 laccase 16 LENGTH=523