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Table 5 DEGs highly up-regulated in glumes of domesticated wheat compared to wild progenitor

From: Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars

id baseMean baseMean baseMean log2Fold Padj log2Fold Padj Putative annotation
(Wild) (Cultiviar) (Landrace) Change(C/W) (C/W) Change(L/W) (L/W)
Ta7asLoc021951.1 42.47 1189.91 717.98 4.81 1.80E-04 4.08 2.50E-03 3-ketoacyl- synthase 12-like
Ta7bsLoc002749.1 2.79 306.18 109.26 6.78 5.12E-05 5.29 4.28E-03 3-ketoacyl- synthase 12-like
Ta6asLoc018551.1 0.00 53.86 18.54 Inf 4.91E-04 Inf 2.85E-02 3-ketoacyl-CoA synthase
Ta7asLoc001384.1 20.78 591.48 521.17 4.83 1.59E-02 4.65 2.39E-02 3-ketoacyl-CoA synthase
Ta7bsLoc001848.1 14.15 363.40 330.26 4.68 5.37E-02 4.54 8.58E-02 3-ketoacyl-CoA synthase
Ta7bsLoc002750.1 14.74 443.97 186.17 4.91 3.14E-03 3.66 7.64E-02 3-ketoacyl-CoA synthase
Ta7bsLoc005172.1 0.46 89.24 55.43 7.59 1.12E-02 6.90 3.76E-02 3-ketoacyl-CoA synthase
Ta7bsLoc011512.1 67.99 919.81 753.44 3.76 3.74E-03 3.47 1.19E-02 3-ketoacyl-CoA synthase
Ta6bsLoc008917.1 0.50 195.60 217.19 8.62 4.50E-10 8.77 3.18E-10 Chalcone synthase
Ta2bsLoc009111.1 0.46 1663.14 453.70 11.81 2.19E-16 9.93 5.54E-12 Chalcone synthase 8, putative
Ta3bLoc000987.1 0.93 1583.66 2159.97 10.74 4.24E-22 11.18 2.26E-23 Chalcone synthase 8, putative
Ta4bsLoc019947.2 0.00 51.71 97.56 Inf 8.90E-04 Inf 1.74E-04 Chalcone synthase 8, putative
Ta6bsLoc002330.1 0.00 306.31 386.67 Inf 3.33E-19 Inf 2.60E-20 Chalcone synthase 8, putative
Ta2alLoc009166.1 71.52 237.64 320.20 1.73 0.0077 2.16 6.86E-05 Amino acid permease 6
Ta2alLoc010251.2 11.86 139.49 88.59 3.56 0.00 2.90 6.08E-03 Amino acid permease-like protein
Ta5asLoc003267.1 28.62 147.37 107.71 2.36 0.00 1.91 2.31E-02 Amino acid permease
Ta1alLoc016727.3 36.90 268.40 132.25 2.86 2.30E-07 1.84 1.04E-02 Silicon transporter