Table 5 DEGs highly up-regulated in glumes of domesticated wheat compared to wild progenitor
From: Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars
id | baseMean | baseMean | baseMean | log2Fold | Padj | log2Fold | Padj | Putative annotation |
|---|---|---|---|---|---|---|---|---|
(Wild) | (Cultiviar) | (Landrace) | Change(C/W) | (C/W) | Change(L/W) | (L/W) | ||
Ta7asLoc021951.1 | 42.47 | 1189.91 | 717.98 | 4.81 | 1.80E-04 | 4.08 | 2.50E-03 | 3-ketoacyl- synthase 12-like |
Ta7bsLoc002749.1 | 2.79 | 306.18 | 109.26 | 6.78 | 5.12E-05 | 5.29 | 4.28E-03 | 3-ketoacyl- synthase 12-like |
Ta6asLoc018551.1 | 0.00 | 53.86 | 18.54 | Inf | 4.91E-04 | Inf | 2.85E-02 | 3-ketoacyl-CoA synthase |
Ta7asLoc001384.1 | 20.78 | 591.48 | 521.17 | 4.83 | 1.59E-02 | 4.65 | 2.39E-02 | 3-ketoacyl-CoA synthase |
Ta7bsLoc001848.1 | 14.15 | 363.40 | 330.26 | 4.68 | 5.37E-02 | 4.54 | 8.58E-02 | 3-ketoacyl-CoA synthase |
Ta7bsLoc002750.1 | 14.74 | 443.97 | 186.17 | 4.91 | 3.14E-03 | 3.66 | 7.64E-02 | 3-ketoacyl-CoA synthase |
Ta7bsLoc005172.1 | 0.46 | 89.24 | 55.43 | 7.59 | 1.12E-02 | 6.90 | 3.76E-02 | 3-ketoacyl-CoA synthase |
Ta7bsLoc011512.1 | 67.99 | 919.81 | 753.44 | 3.76 | 3.74E-03 | 3.47 | 1.19E-02 | 3-ketoacyl-CoA synthase |
Ta6bsLoc008917.1 | 0.50 | 195.60 | 217.19 | 8.62 | 4.50E-10 | 8.77 | 3.18E-10 | Chalcone synthase |
Ta2bsLoc009111.1 | 0.46 | 1663.14 | 453.70 | 11.81 | 2.19E-16 | 9.93 | 5.54E-12 | Chalcone synthase 8, putative |
Ta3bLoc000987.1 | 0.93 | 1583.66 | 2159.97 | 10.74 | 4.24E-22 | 11.18 | 2.26E-23 | Chalcone synthase 8, putative |
Ta4bsLoc019947.2 | 0.00 | 51.71 | 97.56 | Inf | 8.90E-04 | Inf | 1.74E-04 | Chalcone synthase 8, putative |
Ta6bsLoc002330.1 | 0.00 | 306.31 | 386.67 | Inf | 3.33E-19 | Inf | 2.60E-20 | Chalcone synthase 8, putative |
Ta2alLoc009166.1 | 71.52 | 237.64 | 320.20 | 1.73 | 0.0077 | 2.16 | 6.86E-05 | Amino acid permease 6 |
Ta2alLoc010251.2 | 11.86 | 139.49 | 88.59 | 3.56 | 0.00 | 2.90 | 6.08E-03 | Amino acid permease-like protein |
Ta5asLoc003267.1 | 28.62 | 147.37 | 107.71 | 2.36 | 0.00 | 1.91 | 2.31E-02 | Amino acid permease |
Ta1alLoc016727.3 | 36.90 | 268.40 | 132.25 | 2.86 | 2.30E-07 | 1.84 | 1.04E-02 | Silicon transporter |