|
Countrya
|
Trait
|
BTA (Region)b
|
Locationc
|
Frequency
|
P-value*
|
|---|
|
Single marker regression
|
Gradient boosted machine
|
|---|
|
US
|
Milk Yield
|
7 (96.2–96.7)
|
96,541,131
|
0.07
|
0.0005
|
0.07
|
|
13 (19.3–19.9)
|
19,388,240
|
0.10
|
0.0001
|
0.02
|
|
23 (32.7–33.3)
|
32,682,177
|
0.18
|
0.0001
|
0.0019
|
|
25 (24.8–27.5)
|
25,450,477
|
0.05
|
0.00009
|
0.03
|
|
25 (29.1–29.9)
|
29,113,430
|
0.06
|
0.0009
|
-
|
|
Fat Yield
|
8 (82.5–83.4)
|
83,048,502
|
0.08
|
0.0003
|
0.19
|
|
8 (106.6–107.1)
|
106,817,894
|
0.11
|
0.0002
|
0.07
|
|
19 (12.7–15.5)
|
14,409,010
|
0.07
|
0.0002
|
0.005
|
|
20 (34.7–36.3)
|
36,240,997
|
0.24
|
0.0003
|
0.04
|
|
23 (32.7–33.3)
|
32,682,177
|
0.18
|
0.0003
|
0.04
|
|
Protein Yield
|
7 (96.1–96.7)
|
96,192,503
|
0.07
|
0.0002
|
0.04
|
|
13 (19.3 – 19.5)
|
19,388,240
|
0.10
|
0.0004
|
0.16
|
|
23 (31.9–33.3)
|
32,682,177
|
0.18
|
0.00008
|
0.004
|
|
25 (24.8–30.7)
|
29,113,430
|
0.06
|
0.00002
|
0.02
|
|
Calving Interval
|
7 (82.1–83.0)
|
82,173,456
|
0.09
|
0.0004
|
0.003
|
|
AU
|
Milk Yield
|
17 (72.1–73.5)
|
73,055,503
|
0.04
|
0.00004
|
0.03
|
|
20 (28.4–29.5)
|
29,322,034
|
0.33
|
0.0001
|
0.04
|
|
Fat Yield
|
2 (90.4–91.1)
|
91,117,564
|
0.16
|
0.0004
|
0.08
|
|
3 (113.8–114.2)
|
113,930,518
|
0.06
|
0.0007
|
0.20
|
|
7 (6.6–16.7)
|
8,860,921
|
0.17
|
0.00007
|
0.02
|
|
17 (72.1–75.0)
|
73,257,794
|
0.04
|
0.00002
|
0.006
|
|
18 (50.8–53.0)
|
52,024,379
|
0.15
|
0.00001
|
0.005
|
|
Protein Yield
|
3 (113.4–114.6)
|
113,845,303
|
0.06
|
0.000006
|
0.02
|
|
7 (8.8–12.8)
|
8,860,921
|
0.17
|
0.0003
|
0.05
|
|
17 (68.9–75.0)
|
73,055,503
|
0.04
|
0.0000008
|
0.005
|
|
18 (49.0–52.2)
|
49,446,631
|
0.13
|
0.0005
|
0.47
|
-
aAU refers to Australia and US refers to United States
-
bBTA refers to chromosome and the region and location are in Mb build UMD 3.1 (http://bovinegenome.org/cgi-bin/gbrowse/bovine_UMD31/)
-
cReferrs to the location with regions with the highest significance based on Single Marker Regression Analysis
- *P-values were generated based on a permutation test (Doerge and Churchill [23]) for each analysis
