Table 2 Differential expression tests
From: Gene expression profiling during adventitious root formation in carnation stem cuttings
Test | Data subset | Model formula | Contrast tested | DEGs |
|---|---|---|---|---|
1 | All | C + Ti + C : Ti | 2003 R 8 vs. 2101–02 MFR | 23,029 |
2 | All | C + Ti + C : Ti | 2003 R 8:Ti 1 vs.2003 R 8:Ti 2 | 3,820 |
3 | All | C + Ti + C : Ti | 2003 R 8:Ti 1 vs. 2003 R 8:Ti 3 | 4,645 |
4 | All | C + Ti + C : Ti | 2003 R 8:Ti 1 vs. 2003 R 8:Ti 4 | 5,880 |
5 | All | C + Ti + C : Ti | 2003 R 8:Ti 2 vs. 2003 R 8:Ti 3 | 2,828 |
6 | All | C + Ti + C : Ti | 2003 R 8:Ti 2 vs. 2003 R 8:Ti 4 | 2,983 |
7 | All | C + Ti + C : Ti | 2003 R 8:Ti 3 vs. 2003 R 8:Ti 4 | 690 |
8 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 1 vs. 2101–02 MFR:Ti 2 | 11,536 |
9 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 1 vs. 2101–02 MFR:Ti 3 | 12,694 |
10 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 1 vs. 2101–02 MFR:Ti 4 | 12,129 |
11 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 2 vs. 2101–02 MFR:Ti 3 | 9,336 |
12 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 2 vs. 2101–02 MFR:Ti 4 | 9,125 |
13 | All | C + Ti + C : Ti | 2101-02 MFR:Ti 3 vs. 2101–02 MFR:Ti 4 | 3,430 |
14 | 2003 R 8 | Ti + Ti : Tr | Ti 1:Aux vs. Ti 1:Mock | 86 |
15 | 2003 R 8 | Ti + Ti : Tr | Ti 2:Aux vs. Ti 2:Mock | 1 |
16 | 2003 R 8 | Ti + Ti : Tr | Ti 3:Aux vs. Ti 3:Mock | |
17 | 2003 R 8 | Ti + Ti : Tr | Ti 4:Aux vs. Ti 4:Mock | 6 |
18 | 2101-02 MFR | Ti + Ti : Tr | Ti 1:Aux vs. Ti 1:Mock | 1,188 |
19 | 2101-02 MFR | Ti + Ti : Tr | Ti 2:Aux vs. Ti 2:Mock | 21 |
20 | 2101-02 MFR | Ti + Ti : Tr | Ti 3:Aux vs. Ti 3:Mock | 1 |
21 | 2101-02 MFR | Ti + Ti : Tr | Ti 4:Aux vs. Ti 4:Mock |