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Table 3 Genes related to oligotrophic marine environment adaption

From: Genomic insight into Aquimarina longa SW024T: its ultra-oligotrophic adapting mechanisms and biogeochemical functions

Function Encoded gene product Gene
Nitrogen sensing and regulation nitrogen regulation protein ntrY
  nitrogen regulatory protein glnB
Ammonium assimilation glutamine synthetase glnA
  glutamate synthase, NADH/NADPH small subunit gltD
  glutamate synthase, NADPH/NADH large subnit gltB
Denitrification nitrate reductase napA
  nitrite reductase nirK
  nitric oxide reductase norB
  nitrous oxide reductase nosZ
Hydrolysis of dissolved organic phosphorus alkaline phosphatase phoD
Sensing and responding to changes in external/internal P levels PhoP family transcriptional regulator phoP
  histidine kinase phoR
Sulfate transport putative sulfate transporter cysZ
  sulfate permease sulP
Iron uptake TonB-dependent siderophore receptor /
  iron(III) ABC transporter /
  ferrous iron transport protein B feoB
  ferrous iron transport protein A feoA
  ferric enterobactin receptor /
Primary Na + pump Na+-translocating NADH/ubiquinone oxidoreductase subunit A nqrA
  Na+-translocating NADH/ubiquinone oxidoreductase subunit B nqrB
  Na+-translocating NADH/ubiquinone oxidoreductase subunit C nqrC
  Na+-translocating NADH/ubiquinone oxidoreductase subunit D nqrD
  Na+-translocating NADH/ubiquinone oxidoreductase subunit E nqrE
  Na+-translocating NADH/ubiquinone oxidoreductase subunit F nqrF
Primary H+ pump cytochrome d ubiquinol oxidase subunit I cydA
  cytochrome d ubiquinol oxidase subunit II cydB
  cytochrome c oxidase subunit I coxA
  cytochrome c oxidase subunit II coxB
  cytochrome c oxidase subunit III coxC
  cytochrome c oxidase subunit IV coxD
  protoheme IX farnesyltransferase cyoE
Exporting of Na+ ions Na+/H+ antiporter nhaA
  Na+/H+ antiporter nhaB
  Na+/H+ antiporter nhaC
  Na+/H+ antiporter nhaP
Other sodium dependent Na+/proline symporter /
  Na+/phosphate symporter /
  cation/acetate symporter actP
  Na+/dicarboxylate symporter /
  Na+/nucleoside permease /
  Na+/iodide cotransporter /
  Na+/K+/Ca2+ exchanger yrbG
  Na+/bile acid transporter /
  Na+/multivitamin transporter /
  Na+/glucose cotransporter /
  proton/Na+-glutamate symporter /
Extracellular osmolarity and salinity stress adaption MIP family channel protein aquaporin aqpZ