Table 4 Differential expression analysis for 454 data: transcripts expressed ≥ 10-fold more highly in glowworm light organ tissue than in non-light organ tissue
| Â | Â | Light organ | Rest of body | Â | Â | Â | ||||
|---|---|---|---|---|---|---|---|---|---|---|
Contig number | Gene length (bp) | Total gene reads | Normalized expression values | RPKM | Total gene reads | Normalized expression values | RPKM | Difference (normalized values) | Fold change (normalized values) | Putative identity from BLASTX search hits |
16656 | 711 | 955 | 2387.2 | 2876.3 | 2 | 7.4 | 5.9 | 2379.8 | 322.6 | phosphatidylethanolamine-binding protein |
12303 | 1832 | 1702 | 1651.2 | 1989.5 | 9 | 13 | 10.3 | 1638.2 | 127.0 | luciferin 4-monooxygenase |
10195 | 478 | 2588 | 9622.5 | 11594.2 | 14 | 77.4 | 61.6 | 9545.1 | 124.3 | luciferin 4-monooxygenase |
13441 | 1452 | 13014 | 15929.3 | 19193.3 | 87 | 158.4 | 126.0 | 15770.9 | 100.6 | luciferin 4-monooxygenase |
12283 | 1279 | 446 | 619.8 | 746.7 | 3 | 6.2 | 4.9 | 613.6 | 100.0 | glutathione s-transferase |
4637 | 1047 | 273 | 463.4 | 558.4 | 2 | 5.1 | 4.0 | 458.3 | 90.9 | sulfotransferase |
12325 | 1830 | 2569 | 2495 | 3006.2 | 21 | 30.3 | 24.1 | 2464.7 | 82.3 | luciferin 4-monooxygenase |
2377 | 1303 | 339 | 462.4 | 557.1 | 4 | 8.1 | 6.5 | 454.3 | 57.1 | aminoacylase-1 |
2684 | 2024 | 65 | 57.1 | 68.8 | 1 | 1.3 | 1.0 | 55.8 | 43.9 | otopetrin |
17552 | 746 | 513 | 1222.2 | 1472.6 | 8 | 28.4 | 22.5 | 1193.8 | 43.0 | cleavage stimulation factor 64Â kDa subunit |
11885 | 2198 | 49 | 39.6 | 47.7 | 1 | 1.2 | 1.0 | 38.4 | 33.0 | ATP-binding cassette transporter |
3008 | 1206 | 49 | 72.2 | 87.0 | 1 | 2.2 | 1.7 | 70 | 32.8 | GST-containing flywch zinc-finger protein |
16267 | 1647 | 42 | 45.3 | 54.6 | 1 | 1.6 | 1.3 | 43.7 | 28.3 | protein lsm14 homolog b-like |
12345 | 961 | 293 | 541.9 | 652.9 | 7 | 19.3 | 15.3 | 522.6 | 28.1 | carboxylesterase |
2668 | 928 | 72 | 137.9 | 166.1 | 2 | 5.7 | 4.5 | 132.2 | 24.2 | tpa_inf: hdc07468 |
12310 | 1030 | 452 | 779.9 | 939.7 | 13 | 33.4 | 26.5 | 746.5 | 23.4 | carboxylesterase |
4414 | 2035 | 138 | 120.5 | 145.2 | 4 | 5.2 | 4.1 | 115.3 | 23.2 | sodium-dependent phosphate transporter |
4376 | 704 | 32 | 80.8 | 97.3 | 1 | 3.8 | 3.0 | 77 | 21.3 | carbonic anhydrase |
11948 | 1363 | 29 | 37.8 | 45.6 | 1 | 1.9 | 1.5 | 35.9 | 19.9 | facr2_drome ame: full = fatty acyl- reductase cg8303 |
16727 | 1498 | 30 | 35.6 | 42.9 | 1 | 1.8 | 1.4 | 33.8 | 19.8 | short-chain dehydrogenase |
16747 | 1127 | 28 | 44.2 | 53.2 | 1 | 2.3 | 1.9 | 41.9 | 19.2 | cofilin actin-depolymerizing factor homolog |
3316 | 1969 | 21 | 19 | 22.8 | 1 | 1.3 | 1.1 | 17.7 | 14.6 | isoform a |
9802 | 1035 | 22 | 37.8 | 45.5 | 1 | 2.6 | 2.0 | 35.2 | 14.5 | kynurenine aminotransferase |
9665 | 1782 | 19 | 18.9 | 22.8 | 1 | 1.5 | 1.2 | 17.4 | 12.6 | transposable element tc3 transposase |
11695 | 1953 | 56 | 51 | 61.4 | 3 | 4.1 | 3.2 | 46.9 | 12.4 | protein yellow |
12223 | 1142 | 36 | 56 | 67.5 | 2 | 4.6 | 3.7 | 51.4 | 12.2 | ganglioside-induced differentiation-associated protein 1 |
10010 | 267 | 18 | 119.8 | 144.4 | 1 | 9.9 | 7.9 | 109.9 | 12.1 | hypothetical protein Sulku_2095 |
3263 | 1410 | 17 | 21.4 | 25.8 | 1 | 1.9 | 1.5 | 19.5 | 11.3 | multiple inositol polyphosphate phosphatase |
4985 | 851 | 16 | 33.4 | 40.3 | 1 | 3.1 | 2.5 | 30.3 | 10.8 | ubiquitin fusion degradaton protein |
13509 | 589 | 32 | 96.6 | 116.3 | 2 | 9 | 7.1 | 87.6 | 10.7 | kda midgut protein |
16372 | 1493 | 16 | 19 | 22.9 | 1 | 1.8 | 1.4 | 17.2 | 10.6 | cytochrome p450 |
4731 | 700 | 31 | 78.7 | 94.8 | 2 | 7.6 | 6.0 | 71.1 | 10.4 | isoform b |
7053 | 817 | 15 | 32.6 | 39.3 | 1 | 3.2 | 2.6 | 29.4 | 10.2 | No significant similarity found |
16679 | 960 | 45 | 83.3 | 100.4 | 3 | 8.3 | 6.6 | 75 | 10.0 | hypothetical conserved protein |