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Table 4 Differential expression analysis for 454 data: transcripts expressed ≥ 10-fold more highly in glowworm light organ tissue than in non-light organ tissue

From: Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes

   Light organ Rest of body    
Contig number Gene length (bp) Total gene reads Normalized expression values RPKM Total gene reads Normalized expression values RPKM Difference (normalized values) Fold change (normalized values) Putative identity from BLASTX search hits
16656 711 955 2387.2 2876.3 2 7.4 5.9 2379.8 322.6 phosphatidylethanolamine-binding protein
12303 1832 1702 1651.2 1989.5 9 13 10.3 1638.2 127.0 luciferin 4-monooxygenase
10195 478 2588 9622.5 11594.2 14 77.4 61.6 9545.1 124.3 luciferin 4-monooxygenase
13441 1452 13014 15929.3 19193.3 87 158.4 126.0 15770.9 100.6 luciferin 4-monooxygenase
12283 1279 446 619.8 746.7 3 6.2 4.9 613.6 100.0 glutathione s-transferase
4637 1047 273 463.4 558.4 2 5.1 4.0 458.3 90.9 sulfotransferase
12325 1830 2569 2495 3006.2 21 30.3 24.1 2464.7 82.3 luciferin 4-monooxygenase
2377 1303 339 462.4 557.1 4 8.1 6.5 454.3 57.1 aminoacylase-1
2684 2024 65 57.1 68.8 1 1.3 1.0 55.8 43.9 otopetrin
17552 746 513 1222.2 1472.6 8 28.4 22.5 1193.8 43.0 cleavage stimulation factor 64 kDa subunit
11885 2198 49 39.6 47.7 1 1.2 1.0 38.4 33.0 ATP-binding cassette transporter
3008 1206 49 72.2 87.0 1 2.2 1.7 70 32.8 GST-containing flywch zinc-finger protein
16267 1647 42 45.3 54.6 1 1.6 1.3 43.7 28.3 protein lsm14 homolog b-like
12345 961 293 541.9 652.9 7 19.3 15.3 522.6 28.1 carboxylesterase
2668 928 72 137.9 166.1 2 5.7 4.5 132.2 24.2 tpa_inf: hdc07468
12310 1030 452 779.9 939.7 13 33.4 26.5 746.5 23.4 carboxylesterase
4414 2035 138 120.5 145.2 4 5.2 4.1 115.3 23.2 sodium-dependent phosphate transporter
4376 704 32 80.8 97.3 1 3.8 3.0 77 21.3 carbonic anhydrase
11948 1363 29 37.8 45.6 1 1.9 1.5 35.9 19.9 facr2_drome ame: full = fatty acyl- reductase cg8303
16727 1498 30 35.6 42.9 1 1.8 1.4 33.8 19.8 short-chain dehydrogenase
16747 1127 28 44.2 53.2 1 2.3 1.9 41.9 19.2 cofilin actin-depolymerizing factor homolog
3316 1969 21 19 22.8 1 1.3 1.1 17.7 14.6 isoform a
9802 1035 22 37.8 45.5 1 2.6 2.0 35.2 14.5 kynurenine aminotransferase
9665 1782 19 18.9 22.8 1 1.5 1.2 17.4 12.6 transposable element tc3 transposase
11695 1953 56 51 61.4 3 4.1 3.2 46.9 12.4 protein yellow
12223 1142 36 56 67.5 2 4.6 3.7 51.4 12.2 ganglioside-induced differentiation-associated protein 1
10010 267 18 119.8 144.4 1 9.9 7.9 109.9 12.1 hypothetical protein Sulku_2095
3263 1410 17 21.4 25.8 1 1.9 1.5 19.5 11.3 multiple inositol polyphosphate phosphatase
4985 851 16 33.4 40.3 1 3.1 2.5 30.3 10.8 ubiquitin fusion degradaton protein
13509 589 32 96.6 116.3 2 9 7.1 87.6 10.7 kda midgut protein
16372 1493 16 19 22.9 1 1.8 1.4 17.2 10.6 cytochrome p450
4731 700 31 78.7 94.8 2 7.6 6.0 71.1 10.4 isoform b
7053 817 15 32.6 39.3 1 3.2 2.6 29.4 10.2 No significant similarity found
16679 960 45 83.3 100.4 3 8.3 6.6 75 10.0 hypothetical conserved protein
  1. Transcripts are ranked according to normalized expression values; read counts were scaled so that the median values were made equal. RPKM = reads per kilobase of exon model per million mapped reads