Assembly No. | Individuala or integratedb assembly | Assembly approach | Number of fragments (×106) c | Raw assembly | Assembly filtered by mapping count (≥5) | N50 length (bp) | ||
---|---|---|---|---|---|---|---|---|
Number of contigs | Number of subcomponents | Number of contigs | Number of subcomponents | |||||
1 | A | Trinity | 22.719 | 222178 | 168924 | 106323 | 62636 | 3091 |
2 | B | 21.224 | 228165 | 159338 | 94371 | 45267 | 3634 | |
3 | C | 3.569 | 104985 | 83417 | 37504 | 22331 | 3093 | |
4 | D | 23.712 | 417291 | 291424 | 204328 | 104294 | 3693 | |
5 | E | 16.037 | 383737 | 246347 | 149926 | 56669 | 4149 | |
6 | F | 75.929 | 798982 | 562528 | 358433 | 182611 | 3956 | |
7 | G | 82.453 | 787608 | 541906 | 375297 | 191055 | 3860 | |
8 | H | 81.033 | 525154 | 348570 | 250433 | 115476 | 4090 | |
9 | Integrated | All-in-one by Trinity | 326.676 | 1214573 | 852257 | 653132 | 387456 | 2680 |
10 | All-in-one by SOAPdenovo-trans, multiple k-mer lengths | 326.676 | 1087900 | 745363 | 748019 | 422329 | 4854 | |
11 | Assembly following Trinity’s normalization | 39.593d | 1465425 | 721986 | 972512 | 330937 | 3755 | |
12 | Assembly after khmer | 33.251d | 1464412 | 741241 | 945799 | 314023 | 2898 | |
13 | Assembly and clustering | 326.676 | 1562282 | 939252 | 996336 | 457323 | 3897 |