Skip to main content

Table 1 Functional annotation clustering analysis for the 107 genes associated with the eggshell membranes

From: Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics

  GO Terms P-valuea Identified genesb
Two Identified Clusters
Cluster 1 GO:0006412 ~ translation 3.39E-07 EEF1B2, RPL31, RPL21, RPS23, RPS24, EIF4A2, EIF3D, MARS2, EPRS, RPL3, EEF1D, RPL11
   E-scorec 2.23
GO:0003735 ~ structural constituent of ribosome 1.57E-03 RPL31, RPL21, RPS23, RPS24, RPL3, RPL11
GO:0005198 ~ structural molecule activity 5.33E-02 FBN1, RPL31, RPL21, RPS23, RPS24, RPL3, RPL11
Cluster 2 GO:0003723 ~ RNA binding 1.11E-02 PUM2, EIF4A2, MBNL1, PABPC1, HDLBP, CUGBP2, YBX1
   E-score 1.14
GO:0008380 ~ RNA splicing 5.18E-02 MBNL1, CUGBP2, YBX1
Enriched GO Term
  GO:0008135 ~ translation factor activity, nucleic acid binding 7.35E-03 EEF1B2, EIF4A2, EIF3D, EEF1D
  1. a P-value corresponds to the EASE score determined by the DAVID software
  2. bGene IDs corresponding to transcripts associated with the eggshell membranes (Additional file 1)
  3. cE-score: enrichment score determined by the DAVID software