Skip to main content

Table 1 The number of lncRNAs in different classes before and after filtering

From: Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

 

Isoform

Locus

Class-code

Beforea

Afterb

Beforea

Afterb

u (unknown or intergenic region)

7,203

3,763

4,726

2,575

o (overlapped with existed gene with a dramatic difference in gene structures)

5,125

625

2,824

464

x (overlapped with existed gene in an opposite direction)

2,658

1,471

1,438

902

i (located in introns)

41

25

40

24

Total

15,027

5,884

8,709c

3,862c

  1. Notes:
  2. aThe number of original isoforms and loci predicted by Cufflinks
  3. bThe number of lncRNAs after filtering
  4. c“Total” number is smaller than the sum of the column, because certain loci have multiple isoforms with different class codes