Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

Table 2 Identification of conserved lncRNAs in related species

Number of Fve-lncRNAs with homologs in other species	Number of Arabidopsis lncRNAs with homologs in other species	Total lncRNAs in other species	Other Species	Reference for lncRNA-identification in other species
0/0	-/-	6,480	Arabidopsis	Liu et al. [31]
0/0	0/0	2,492	Maize	Boerner and McGinnis [30]
0/0	0/0	1,704	Maize (hc-lncRNAs)	Li et al. [32]
1/1	5/27	18,459	Maize (pre-lncRNAs)	Li et al. [32]
0/0	5/9	2,224	Rice	Zhang et al. [35]
-/-	0/0	5,884	Fragaria vesca	This wrok
49/37	2/2	4,301	Malus-unigene	This work
19/7	0/0	1,315	Prunus-unigene	This work

Notes:
Column 1 shows the number of Fve-lncRNAs with homologs in other (non-Fragaria) species listed in column 4. The number before ‘/’ refers to lncRNA number in Fragaria and the number after ‘/’ refers to the number of lncRNA in the target (non-Fragaria) species. The numbers in column 1 were derived from blast searches using strawberry lncRNAs as queries against the target species. The blast E-value cutoff is < 0.001. The second column shows results using Arabidopsis lncRNAs as queries against corresponding target species. No blast was performed against the query itself and hence was marked as ‘-/-’

ISSN: 1471-2164