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Table 2 Pedigree results for all genotyped offspring

From: Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

Facility/Group

No. of offspring

Potential dams

Potential sires

No of loci genotyped

Average % missing gts

Comments

1/1

2

1 known

2

164

0.51

All resolved

1/2

2

1 known

2

164

0.61

All resolved

1/3

4

1 known

4

164

0.60

One unresolved- two sires possible

1/4

4

1 known

5

164

0.60

All resolved

1/5

7

4

4

164

0.52

One unresolved- two dams and two sires possible

1/6

4

1 known

4

164

0.70

All resolved

2/1

8

5

8

192

0.22

Exclusions only- full-sibs and half sibs amongst candidate parents, 1 dam failed genotyping

2/2

13

5 known

8

192

0.24

Exclusions only- half-sibs amongst candidate sires, no sample for 1 known dam

3/1

5

3

5

192

0.29

Exclusions only- full- and half-sibs amongst candidate sires

4/1

6

3

12

192

0.26

Exclusions only- half-sibs amongst candidate sires and no sample for one candidate dam

5/1

11

8

6

192

0.28

Exclusions only- half-sibs amongst candidate parents

  1. Nb. Number of loci differ as trios from breeding facility 1 were genotyped in the first sequencing run whereas trios from breeding facilities 2–5 were sequenced in runs 2, 3 and 4 with a refined marker set. Known dams are according to information provided from studbook management