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Table 2 LincRNAs acting as miRNA decoys

From: Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

zma-miRNAsa Transcript b start-endc MFEperfectd MFEsitee MFEratiof
zma-miR156a-3p Li_TCONS_00044513 70-90 −41.7 −27.3 0.654676258992806
zma-miR156b-3p Li_TCONS_00088709 477-501 −40.8 −28.28 0.693137254901961
zma-miR159a-5p Li_TCONS_00096446 109-129 −36.4 −23.8 0.653846153846154
zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p Boerner_Z27kG1_11801 143-162 −35.3 −23.7 0.671388101983003
zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p Boerner_Z27kG1_16385 143-162 −35.3 −23.7 0.671388101983003
zma-miR159b-5p:zma-miR159k-5p:zma-miR159j-5p Li_TCONS_00012571 604-627 −35.3 −23.4 0.662889518413598
zma-miR159d-3p:zma-miR159c-3p zhang_TCONS_00029225 1271-1291 −40.1 −27.3 0.680798004987531
zma-miR159e-3p Boerner_Z27kG1_01522 880-899 −38.2 −25.2 0.659685863874345
zma-miR159e-3p Boerner_Z27kG1_22626 192-211 −38.2 −25.3 0.662303664921466
zma-miR159e-3p Li_TCONS_00012087 121-141 −38.2 −26.9 0.704188481675393
zma-miR159e-3p zhang_TCONS_00056321 208-228 −38.2 −28.48 0.745549738219895
zma-miR159e-5p Li_TCONS_00071752 34-50 −41.8 −27.5 0.657894736842105
zma-miR159g-3p Boerner_Z27kG1_05478 507-526 −37.6 −25.3 0.672872340425532
zma-miR159g-3p Boerner_Z27kG1_09702 320-340 −37.6 −27.7 0.736702127659574
zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p Boerner_Z27kG1_11801 143-162 −37.8 −27.2 0.719576719576720
zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p Boerner_Z27kG1_16385 143-162 −37.8 −27.2 0.719576719576720
zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p Li_TCONS_00012571 604-627 −37.8 −27.3 0.722222222222222
zma-miR159g-5p:zma-miR159h-5p:zma-miR159i-5p Li_TCONS_00059484 191-211 −37.8 −24.88 0.658201058201058
zma-miR160c-3p Boerner_Z27kG1_01735 212-233 −41.5 −27.4 0.660240963855422
zma-miR160d-3p Boerner_Z27kG1_01291 1077-1102 −44.4 −30.1 0.677927927927928
zma-miR160f-3p Li_TCONS_00062998 301-321 −46.8 −31 0.662393162393162
zma-miR162-5p Li_TCONS_00020299 306-326 −40.6 −27.1 0.667487684729064
zma-miR164b-3p Boerner_Z27kG1_17564 219-235 −39.3 −27.3 0.694656488549618
zma-miR164b-3p Li_TCONS_00023489 142-160 −39.3 −27.5 0.699745547073791
zma-miR164b-3p Li_TCONS_00023490 142-160 −39.3 −27.5 0.699745547073791
zma-miR164b-3p Li_TCONS_00052687 45-68 −39.3 −32.1 0.816793893129771
zma-miR164b-3p Li_TCONS_00062623 8-31 −39.3 −30.08 0.765394402035623
zma-miR164c-3p:zma-miR164h-3p Li_TCONS_00048247 268-291 −39.7 −26.1 0.657430730478589
zma-miR164c-5p:zma-miR164a-5p:zma-miR164b-5p:zma-miR164g-5p:zma-miR164d-5p Li_TCONS_00011715 349-371 −44.3 −32.8 0.740406320541761
zma-miR164c-5p:zma-miR164a-5p:zma-miR164b-5p:zma-miR164g-5p:zma-miR164d-5p Li_TCONS_00031357 1-20 −44.3 −30.9 0.697516930022573
zma-miR164f-5p Li_TCONS_00011715 349-371 −44.3 −34.1 0.769751693002257
zma-miR164f-5p Li_TCONS_00031357 1-20 −44.3 −30.3 0.683972911963883
zma-miR164h-5p Li_TCONS_00011715 349-371 −43.6 −31.1 0.713302752293578
zma-miR164h-5p Li_TCONS_00031357 1-20 −43.6 −31.1 0.713302752293578
zma-miR166g-5p Li_TCONS_00014574 19-43 −37.9 −25.6 0.675461741424802
zma-miR166n-5p Boerner_Z27kG1_07658 926-945 −40.9 −28.9 0.706601466992665
zma-miR166n-5p Boerner_Z27kG1_17312 433-455 −40.9 −29.2 0.713936430317848
zma-miR167e-3p zhang_TCONS_00077767 493-515 −38.6 −25.5 0.660621761658031
zma-miR167f-3p Boerner_Z27kG1_02792 196-221 −43.5 −28.3 0.650574712643678
zma-miR167j-3p Li_TCONS_00096821 264-283 −32.4 −21.48 0.662962962962963
zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p Boerner_Z27kG1_15115 783-800 −36.5 −26.1 0.715068493150685
zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p Li_TCONS_00032815 227-244 −36.5 −25 0.684931506849315
zma-miR169i-3p:zma-miR169j-3p:zma-miR169k-3p Li_TCONS_00091165 524-540 −36.5 −24.2 0.663013698630137
zma-miR169l-5p Li_TCONS_00023317 7-30 −40.2 −27.04 0.672636815920398
zma-miR169m-3p Li_TCONS_00034371 236-259 −36.2 −24.8 0.685082872928177
zma-miR169n-3p Li_TCONS_00064018 104-127 −40.4 −26.88 0.665346534653465
zma-miR169n-3p Li_TCONS_00064018 129-152 −40.4 −26.88 0.665346534653465
zma-miR169n-3p Li_TCONS_00096947 82-105 −40.4 −26.88 0.665346534653465
zma-miR169o-3p Boerner_Z27kG1_03458 184-205 −40.8 −29.1 0.713235294117647
zma-miR169q-3p Boerner_Z27kG1_03458 189-205 −39.5 −26.5 0.670886075949367
zma-miR169q-3p Li_TCONS_00041379 300-317 −39.5 −26.3 0.665822784810127
zma-miR169q-3p Li_TCONS_00064018 104-127 −39.5 −27.4 0.693670886075949
zma-miR169q-3p Li_TCONS_00064018 129-152 −39.5 −27.4 0.693670886075949
zma-miR169q-3p Li_TCONS_00096947 82-105 −39.5 −27.4 0.693670886075949
zma-miR169q-3p zhang_TCONS_00028666 216-234 −39.5 −26.9 0.681012658227848
zma-miR169q-3p zhang_TCONS_00056448 36-59 −39.5 −25.7 0.650632911392405
zma-miR171a-5p Boerner_Z27kG1_20123 1069-1091 −35.8 −23.4 0.653631284916201
zma-miR171f-5p Boerner_Z27kG1_04122 35-55 −38.8 −25.4 0.654639175257732
zma-miR171f-5p Li_TCONS_00027786 158-178 −38.8 −26.1 0.672680412371134
zma-miR171f-5p Li_TCONS_00096642 338-357 −38.8 −25.7 0.662371134020619
zma-miR171h-3p:zma-miR171k-3p Boerner_Z27kG1_10860 672-691 −37.4 −24.7 0.660427807486631
zma-miR171h-3p:zma-miR171k-3p Li_TCONS_00082779 252-270 −37.4 −24.8 0.663101604278075
zma-miR171k-5p:zma-miR171h-5p Boerner_Z27kG1_00580 730-750 −35.4 −23.6 0.666666666666667
zma-miR171n-5p Boerner_Z27kG1_20123 1069-1091 −35.8 −25.9 0.723463687150838
zma-miR172a:zma-miR172c-3p:zma-miR172d-3p:zma-miR172b-3p Li_TCONS_00065651 597-618 −33.2 −23.6 0.710843373493976
zma-miR172b-5p:zma-miR172d-5p Li_TCONS_00044327 23-44 −34.5 −22.7 0.657971014492754
zma-miR172c-5p Li_TCONS_00044327 23-44 −36.5 −25.3 0.693150684931507
zma-miR172e Li_TCONS_00065651 596-618 −36 −23.5 0.652777777777778
zma-miR319a-5p:zma-miR319c-5p Li_TCONS_00081252 74-96 −39.1 −26.42 0.675703324808184
zma-miR319a-5p:zma-miR319c-5p zhang_TCONS_00063429 16-39 −39.1 −27.16 0.694629156010230
zma-miR393c-5p:zma-miR393a-5p Li_TCONS_00080809 144-164 −39.1 −25.7 0.657289002557545
zma-miR394b-3p:zma-miR394a-3p Boerner_Z27kG1_10860 353-375 −38.9 −26.44 0.679691516709512
zma-miR394b-3p:zma-miR394a-3p Li_TCONS_00072326 83-101 −38.9 −25.7 0.660668380462725
zma-miR394b-3p:zma-miR394a-3p Li_TCONS_00089213 283-304 −38.9 −26.3 0.676092544987147
zma-miR394b-5p:zma-miR394a-5p Boerner_Z27kG1_06309 454-473 −39.1 −26.3 0.672634271099744
zma-miR394b-5p:zma-miR394a-5p Boerner_Z27kG1_10706 340-363 −39.1 −27.3 0.698209718670077
zma-miR395b-5p Li_TCONS_00047895 156-179 −38.6 −28.68 0.743005181347150
zma-miR395b-5p Li_TCONS_00047896 156-179 −38.6 −28.68 0.743005181347150
zma-miR395c-5p Li_TCONS_00080157 364-381 −40.6 −27.7 0.682266009852217
zma-miR395i-5p Li_TCONS_00047895 156-179 −40.4 −31.38 0.776732673267327
zma-miR395i-5p Li_TCONS_00047896 156-179 −40.4 −31.38 0.776732673267327
zma-miR395k-5p Boerner_Z27kG1_14168 189-212 −36.2 −23.6 0.651933701657459
zma-miR395k-5p Boerner_Z27kG1_16395 212-235 −36.2 −23.6 0.651933701657459
zma-miR395k-5p Boerner_Z27kG1_21452 380-403 −36.2 −23.6 0.651933701657459
zma-miR395k-5p Li_TCONS_00051216 53-77 −36.2 −26.02 0.718784530386740
zma-miR395l-5p Li_TCONS_00062888 247-268 −38.4 −28.6 0.744791666666667
zma-miR395n-5p Li_TCONS_00047895 156-179 −38.3 −28.38 0.740992167101828
zma-miR395n-5p Li_TCONS_00047896 156-179 −38.3 −28.38 0.740992167101828
zma-miR396b-3p:zma-miR396a-3p Li_TCONS_00019831 289-309 −32.9 −23.4 0.711246200607903
zma-miR396g-5p:zma-miR396h Boerner_Z27kG1_02332 1122-1144 −35.3 −23 0.651558073654391
zma-miR396g-5p:zma-miR396h Li_TCONS_00081264 211-233 −35.3 −23.78 0.673654390934844
zma-miR398b-3p:zma-miR398a-3p Li_TCONS_00081462 279-299 −45.3 −30.08 0.664017660044150
zma-miR399d-5p Li_TCONS_00097416 279-299 −44.2 −28.88 0.653393665158371
zma-miR399e-5p Boerner_Z27kG1_08283 467-487 −41.4 −30.6 0.739130434782609
zma-miR399e-5p Li_TCONS_00097327 326-349 −41.4 −27 0.652173913043478
zma-miR399g-5p Boerner_Z27kG1_13975 327-345 −49.4 −35.6 0.720647773279352
zma-miR444a:zma-miR444b Boerner_Z27kG1_21675 448-466 −35.7 −25.2 0.705882352941176
zma-miR482-3p Boerner_Z27kG1_19929 311-332 −35.2 −28.4 0.806818181818182
zma-miR482-3p Li_TCONS_00031436 121-145 −35.2 −30.2 0.857954545454545
zma-miR482-3p Li_TCONS_00056585 185-206 −35.2 −23.4 0.664772727272727
zma-miR482-3p Li_TCONS_00072944 771-793 −35.2 −25.3 0.718750000000000
zma-miR482-3p Li_TCONS_00097147 282-301 −35.2 −24.4 0.693181818181818
zma-miR482-5p Li_TCONS_00011383 222-239 −36.7 −24.1 0.656675749318801
zma-miR482-5p Li_TCONS_00024356 309-331 −36.7 −24.2 0.659400544959128
zma-miR482-5p Li_TCONS_00074927 138-158 −36.7 −24.38 0.664305177111717
zma-miR528a-3p:zma-miR528b-3p zhang_TCONS_00045504 663-688 −42.2 −30.6 0.725118483412322
  1. amiRNA data from miRBase 21.0. bDecoyed lincRNA genes for the miRNAs. cThe starting and terminating sites in the lincRNAs when it is bound by the miRNAs. dMFE of a perfectly matched site. eMFE of the alignments. fMFEsite/MFEperfect, the calculation based on the method in Tafer et al [50]
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BMC Genomics

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