Table 1 Detected isoforms of selected human embryonic stem cell marker genes
From: Combined ultra-low input mRNA and whole-genome sequencing of human embryonic stem cells
Gene | Nearest ref ID | Locus | Length | Sample1 FPKM | Sample2 FPKM | Number of isoforms |
|---|---|---|---|---|---|---|
DNMT3B | 212.59 | 132.05 | 4/7 (13) | |||
NM_006892 | chr20:31350190-31397167 | 789 | 9.71 | 4.87 | ||
NM_006892 | chr20:31350190-31397167 | 721 | 0.00 | 3.00 | ||
NM_006892 | chr20:31350190-31397167 | 3463 | 18.81 | 0.00 | ||
NM_006892 | chr20:31350190-31397167 | 4131 | 0.00 | 21.60 | ||
NM_006892 | chr20:31350190-31397167 | 4203 | 175.74 | 0.54 | ||
NM_006892 | chr20:31350190-31397167 | 4336 | 8.33 | 65.00 | ||
NM_175848 | chr20:31350190-31397167 | 4276 | 0.00 | 29.39 | ||
NM_175849 | chr20:31350190-31397167 | 4087 | 0.00 | 7.65 | ||
NANOG | 3.91 | 6.62 | 1/1 (1) | |||
NM_024865 | chr12:7941994-7948655 | 2089 | 3.91 | 6.62 | ||
POU5F1 | 507.35 | 484.58 | 3/2 (21) | |||
NM_001173531 | chr6:31132113-31138451 | 1247 | 156.01 | 0.00 | ||
NM_002701 | chr6:31132113-31138451 | 1401 | 348.96 | 483.12 | ||
NM_203289.6 | chr6:31132113-31138451 | 1733 | 2.38 | 1.46 |