YM001 position | HN016 position | Gene product | Biological function | Variation | Effect on YM001 coding |
---|---|---|---|---|---|
Carbohydrate metabolism | |||||
 136826 | 142595 | Fructose-bisphosphate aldolase | Fructose and mannose metabolism | SNV | K259N substitution |
 780441 | 786056 | Phosphoenolpyruvate carboxylase | Microbial metabolism in diverse environments and Carbon metabolism | SNV | I181I substitution |
 868738 | 874444 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Biosynthesis of the bacterial cell wall and is critical for bacterial survival | SNV | H126R substitution |
 1403613 | 1420411 | glycosyl transferase family 8 | glycosyl synthesis | SNV | T383I substitution |
 1534895 | 1551880 | metallophosphoesterase | hydrolysis of phosphate | SNV | Y64C substitution |
Lipid metabolism | |||||
 1805677 | 1822388 | Phosphatidate cytidylyltransferase | Glycerophospholipid metabolism | SNV | P239L substitution |
Nucleotide metabolism | |||||
 83930 | 89762 | DNA-directed RNA polymerase subunit alpha | Primary transcript RNA production and RNA chains construction | SNV | V258A substitution |
 192012 | 197717 | DNA-directed RNA polymerase subunit beta | Primary transcript RNA production and RNA chains construction | SNV | P360A substitution |
 1515764 | 1532749 | Thymidylate kinase | dTDP Biosynthesis | SNV | D35D substitution |
Amino acid metabolism | |||||
 2033153 | 2049866 | Arginine deiminase | Acid tolerant | SNV | V362I substitution |
Environmental information processing | |||||
 1858831 | 1875542 | Sensor histidine kinase | Peptidoglycan metabolism | SNV | R126H substitution |
Translation | |||||
 393841 | 399503 | Transcription elongation factor NusA | RNA polymerase-associated protein | SNV | E116G substitution |
 407665 | 413327 | FUR family transcriptional regulator | Peroxide stress response regulator | SNV | S42I substitution |
 755561 | 761176 | S1 RNA-binding protein | Post-transcriptional control of RNAs | SNV | R460S substitution |
 949470 | 955242 | chloramphenicol acetyltransferase | Hexapeptide repeat-containing transferase | SNV | G43Y substitution |
 1264942 | 1270622 | TetR family transcriptional regulator | Transcriptional regulator | SNV | W122R substitution |
 1967217 | 1983929 | Arginine repressor ArgR | Transcriptional regulator of arginine metabolism | SNV | 117-aa C-terminal deletion |
DNA repair and recombination proteins | |||||
 1022277 | 1028049 | DNA topoisomerase I | Regulation of supercoiling and maintenance of genetic stability | SNV | T644K substitution |
Transport | |||||
 253283 | 258943 | amino acid ABC transporter permease | Membrane transport | SNV | G147E substitution |
297760..297761 | 303421 | PTS system transporter subunit IIC | Starch and sucrose metabolism | Deletion | 10-aa C-terminal extension,102-aa C-terminal deletion |
 364407 | 370068 | MarR family transcriptional regulator | Regulate multiple antibiotic resistance and the oxidative stress response | SNV | H106N substitution |
 970865 | 976637 | Sugar ABC transporter permease | simple sugar transport system permease protein | SNV | T5T substitution |
 1635394 | 1652379 | Multidrug transporter | Drug efflux proteins | SNV | M126V substitution |
 1663151 | 1680136 | Glycerol uptake facilitator protein | glycerol-uptake facilitator | SNV | I44I substitution |
 1761614 | 1778325 | PTS system ascorbate-specific transporter subunit IIC | Microbial metabolism in diverse environments | SNV | D327J substitution |
 1828308 | 1845019 | PTS system transporter subunit IIB | Galactose metabolism | SNV | M1T substitution |
 2020460 | 2037173 | Cobalt transporter ATP-binding subunit | energy-coupling factor transport system ATP-binding protein | SNV | E79K substitution |
Folding, sorting and degradation | |||||
 743279..743280 | 748941 | Recombinase RecF | Manipulate the structure of genomes | Deletion | 6-aa C-terminal extension,855-aa C-terminal deletion |
Unknown function | |||||
 1271532..1271533 | 1277212 | Hypothetical protein | Unknown function | Deletion | Y63N substitution, 5-aa C-terminal extension,81-aa C-terminal deletion |