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Table 1 Highest-scoring BLASTn hits for spacer sequences

From: A newly discovered Bordetella species carries a transcriptionally active CRISPR-Cas with a small Cas9 endonuclease

BLASTn Sp# %ID %cov %HQ
Protospacer Locus tag/name Organism
Prophage: hypothetical protein L544_3238 Bordetella hinzii OH87 BAL007II 8 100 100 100
Prophage: intergenic region L544_1114 Bordetella hinzii OH87 BAL007II 9 100 100 100
L544_1115
Prophage: replicative DNA helicase L541_4891 Bordetella hinzii CA90 BAL1384 16 100 97 97
dnaB_2
Mobile element of IS3/IS911 family Transposase Variovorax paradoxus EPS 13 90 100 90
Pyruvate carboxyl transferase C791_4721 Amycolatopsis azurea DSM 43854 6 93 97 90
transfer RNA tRNA-Gly Bifidobacterium asteroides PRL2011 1 93 93 86
Prophage: Siphovirus gp157 BB3535 Bordetella bronchiseptica RB50 10 93 93 86
Phage structural component KF689531.1 Gokushovirinae clone BBHD08n1 20 96 86 83
major capsid
  1. Sp# spacer number, %ID percent nt identity, %cov percent coverage, %HQ percent hit quality