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Table 1 Number and distribution of the EST-SSRs found for the EST sequences of Oryza and Arabidopsis

From: Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants

 

Genomic

Intron

UTR

Exon

Total

     
 

Oryza

Arabidopsis

Oryza

Arabidopsis

Oryza

Arabidopsis

Oryza

Arabidopsis

Oryza

Arabidopsis

Dinucleotides

17

2

26

5

29

16

1

1

73

24

Trinucleotides

18

2

16

2

70

26

142

67

246

97

Tetranucleotides

3

0

3

0

9

3

2

0

17

3

Pentanucleotides

4

0

1

0

10

3

0

0

15

3

Hexanucleotides

6

1

3

0

13

1

24

10

46

12

Total

48

5

49

7

131

49

169

78

397

139

  1. SSR search was only carried out in those EST sequences downloaded from the dbEST database (NCBI) that had a match in their respective reference genomes using BLASTn