Table 2 Number of ETS-SSRs found in the IUCN plant genera containing EST sequences in the dbEST
Taxonomic groups | Ng | Ng SSR | NEST | Dinucleotides | Trinucleotides | Tetranucleotides | Pentanucleotides | Hexanucleotides | Total | Commonest motifs |
|---|---|---|---|---|---|---|---|---|---|---|
Florideophyceae | 2 | 2 | 16645 | 2 | 10 | 2 | 1 | 10 | 25 | ACG/GGC |
Charophyceae | 1 | 1 | 88280 | 16 | 77 | 39 | 38 | 30 | 200 | AG/TGA |
Acrogymnospermae | 18 | 15 | 1191184 | 144 | 145 | 30 | 58 | 193 | 570 | AG/AT/CAG |
Lycopodiophyta | 3 | 3 | 101292 | 20 | 122 | 15 | 7 | 26 | 190 | AG/CAG/TGA |
Monilophyta | 5 | 3 | 35665 | 129 | 18 | 3 | 2 | 6 | 158 | AG/TGA |
Magnoliidae | 5 | 5 | 68569 | 193 | 89 | 11 | 9 | 30 | 332 | AG/AT/CAG |
Monocotyledoneae | 58 | 37 | 3197142 | 598 | 1395 | 296 | 323 | 496 | 3108 | AG/AT/AAG/CGG |
Eudicotyledoneae | 165 | 127 | 9742277 | 4160 | 4820 | 760 | 769 | 2010 | 12519 | AG/AT/AAG/TGA |
Total | 257 | 193 | 14498726 | 5262 | 6676 | 1156 | 1207 | 2801 | 17102 | Â |