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Table 6 Results for the top 30 gene-annotated autosomal DMRs associated with sex in CHAMACOS newborns

From: Sex differences in DNA methylation assessed by 450 K BeadChip in newborns

Gene symbol(s)

Chromosome

Start positiona

End positiona

# of probes

MaxFC for girls compared to boys

Minimum P-value

KRT77

12

53084709

53085323

4

0.09

1.34E-132

AMDHD2,ATP6V0C

16

2569911

2571449

9

0.24

7.17E-129

PPP1R3G

6

5085986

5087749

7

0.16

3.35E-78

CDK6

7

92461971

92464481

14

0.02

1.89E-65

TFDP1

13

114291977

114292740

10

−0.08

4.54E-57

CYP1A1

15

75018150

75019376

26

0.12

6.24E-57

C6orf174

6

127796287

127797286

7

0.12

2.64E-54

SMAD2

18

45456441

45458698

11

0.02

1.47E-51

ARID1B

6

157097800

157099375

9

0.07

6.59E-48

PEX10

1

2344089

2347015

26

0.07

6.53E-46

ATP5J,GABPA

21

27106793

27108257

11

−0.06

9.90E-45

SLC6A2

16

55689865

55691102

9

0.05

1.00E-43

A1BG,NCRNA00181

19

58861502

58862398

6

0.11

1.14E-43

PHF17

4

129731835

129733574

8

−0.03

2.69E-43

NUPL1

13

25874859

25876335

14

0.11

8.61E-42

PPFIA3

19

49636270

49636594

3

0.15

2.68E-40

ZNF69

19

11998457

11999148

11

0.03

4.58E-39

REM1,NCRNA00028

20

30071726

30073576

9

0.11

7.17E-39

YWHAQ

2

9770130

9771347

7

0.03

1.00E-37

LOC644649

16

59788728

59790180

7

−0.09

1.74E-35

FOXN3

14

89878584

89878733

5

−0.11

2.22E-35

PXDNL

8

52320944

52322341

9

0.07

7.31E-35

SHANK3

22

51112536

51114364

4

0.06

1.86E-34

SHANK2

11

70672365

70673256

11

−0.06

1.33E-33

RBM39

20

34319899

34319989

2

−0.06

1.74E-33

GIPC2

1

78511140

78512129

12

0.06

1.75E-33

CSNK1D

17

80230660

80232440

12

0.03

1.82E-33

NAPSA

19

50860534

50862121

8

−0.10

2.28E-33

FBXO47

17

37123638

37124558

9

0.08

2.94E-31

CCDC121,GPN1

2

27850964

27852231

14

0.05

5.71E-31

  1. Max fold changes (FC) reported in M-value scale for the change in methylation of girls relative to boys
  2. aPositions shown for hg19 (Genome Reference Consortium GRCh37) genome assembly