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Table 1 RNA-Seq data of genes selected for validation by RT-qPCR. Listed are genes sorted according to their log2 fold change

From: High-throughput mRNA and miRNA profiling of epithelial-mesenchymal transition in MDCK cells

Gene ID Gene name log2 fold change p value
MDCK:    
ENSCAFG00000031946 CLDN2 −6.259056032 5.47E-12
ENSCAFG00000016608 SLIT2 −6.215152318 4.30E-13
ENSCAFG00000013287 MAPK4 −6.192289989 1.03E-29
ENSCAFG00000001015 ANXA13 −5.819849287 2.37E-08
ENSCAFG00000001531 SMO −5.748090387 1.31E-20
ENSCAFG00000011532 EGF −5.740353485 6.84E-27
ENSCAFG00000001403 PODXL −4.106838157 4.13E-11
ENSCAFG00000010602 ELF3 −3.946262741 8.64E-31
ENSCAFG00000020397 CDH16 −2.380998977 1.40E-09
ENSCAFG00000020305 CDH1 −1.352645238 0.000860681
MDCK-Ras:    
ENSCAFG00000007923 MSC 7.653897777 9.15E-05
ENSCAFG00000006138 LUM 7.532307731 3.38E-10
ENSCAFG00000015054 MMP1 7.288819658 2.01 E-07
ENSCAFG00000006766 DLC1 7.217480395 6.66E-14
ENSCAFG00000029321 WNT5A 7.06017597 6.47E-06
ENSCAFG00000007673 MMP14 7.008651621 2.60E-14
ENSCAFG00000002525 COL15A1 6.927033269 2.69E-09
ENSCAFG00000011197 SULF1 6.905784034 6.41 E-09
ENSCAFG00000005497 ZEB2 6.753561154 5.82E-13
ENSCAFG00000017943 ANXA6 6.741711305 6.71 E-64
ENSCAFG00000004023 ZEB1 6.167816343 7.14E-16
ENSCAFG00000002528 TGFBR1 4.97741794 4.72E-37
ENSCAFG00000006638 SNAI2 4.785172701 4.54E-07
ENSCAFG00000011499 SNAI1 1.367598098 0.035198575