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Table 2 Minor allele frequency of each marker and effect of each allele on the resistance against Piscirickettsia salmonis

From: Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes

SNP id

A1

A2

MAF

A1 A1

A1 A2

A2 A2

Effect (A2)

AQI_UCh-93346943

C

A

0.24

34.96

32.77

31.33

−2.15 (0.26)

AQI_UCh-93451692

C

A

0.29

34.64

32.27

29.34

−2.91 (0.32)

AQI_UCh-93323028

G

T

0.31

34.53

32.04

30.24

−2.73 (0.33)

AQI_UCh-93268476

C

T

0.24

35.40

33.50

31.86

−1.89 (0.23)

AQI_UCh-93384759

G

T

0.31

34.70

32.74

29.93

−2.31 (0.28)

  1. A1 and A2 are the minor and major alleles, respectively. Mean value of the time to death by genotype for each marker. A1: high resistance allele. Effect of the A2 allele and standard error in brackets