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Table 2 Minor allele frequency of each marker and effect of each allele on the resistance against Piscirickettsia salmonis

From: Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes

SNP id A1 A2 MAF A1 A1 A1 A2 A2 A2 Effect (A2)
AQI_UCh-93346943 C A 0.24 34.96 32.77 31.33 −2.15 (0.26)
AQI_UCh-93451692 C A 0.29 34.64 32.27 29.34 −2.91 (0.32)
AQI_UCh-93323028 G T 0.31 34.53 32.04 30.24 −2.73 (0.33)
AQI_UCh-93268476 C T 0.24 35.40 33.50 31.86 −1.89 (0.23)
AQI_UCh-93384759 G T 0.31 34.70 32.74 29.93 −2.31 (0.28)
  1. A1 and A2 are the minor and major alleles, respectively. Mean value of the time to death by genotype for each marker. A1: high resistance allele. Effect of the A2 allele and standard error in brackets
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BMC Genomics

ISSN: 1471-2164

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