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Table 1 Features of the in silico genome-scale metabolic model of S. limacinum, M. alpina and Y. lipolytica

From: Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

Features iCY1170_DHA iCY1106 iYL619_PCP
Genome feature    
 Genome size (Mb) 60.93 38.38 20.50
 Open reading frames (ORFs) 14,859 11,631 6453
In silico metabolic model    
 Reactions included in the model 1769 1854 1142
 Biochemical reactions 1386 1391 781
 Transport reactions 195 247 236
 Exchange reactions 188 216 125
 Metabolites 1659 1732 843
 ORFs assigned in metabolic model 1170 1106 619
 ORF coveragea (%) 7.9 9.5 9.6
  1. aThe number of ORFs in the iCY1170_DHA model divided by the total number of ORFs in the genome