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Table 4 Comparison between experimental results and simulated results about the usage of different carbon and nitrogen sources

From: Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

Carbon source

In vivo

In silico a

In silico b

Reference

Glucose

+

+

+

[6, 21, 22]

Fructose

+

+

+

[6, 21, 22]

Mannose

+

+

+

[21, 22]

Galactose

+

+

+

[21, 22]

Xylose

+

-

+

[21, 22]

Arabinose

+

-

+

[21, 22]

Ribose

+

+

+

[21, 22]

Lactose

+

-

+

[6, 21, 22]

Sucrose

+

+

+

[21, 22]

Maltose

+

+

+

[6, 21, 22]

Starch

+

-

+

[6, 21, 22]

Glycerol

+

+

+

[6, 21, 22]

Melibiose

+

+

+

[21]

Raffinose

+

+

+

[21]

Trehalose

+

-

+

[21]

Nitrogen Source

    

NH4 +

+

+

+

[6]

NO3 −

+

-

+

[6]

Urea

+

+

+

[6, 21]

  1. aBefore filling gaps; bAfter filling gaps. To make the GSMM consistent with experimental data, some missing reactions were added to model