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Table 4 Comparison between experimental results and simulated results about the usage of different carbon and nitrogen sources

From: Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

Carbon source In vivo In silico a In silico b Reference
Glucose + + + [6, 21, 22]
Fructose + + + [6, 21, 22]
Mannose + + + [21, 22]
Galactose + + + [21, 22]
Xylose + - + [21, 22]
Arabinose + - + [21, 22]
Ribose + + + [21, 22]
Lactose + - + [6, 21, 22]
Sucrose + + + [21, 22]
Maltose + + + [6, 21, 22]
Starch + - + [6, 21, 22]
Glycerol + + + [6, 21, 22]
Melibiose + + + [21]
Raffinose + + + [21]
Trehalose + - + [21]
Nitrogen Source     
NH4 + + + + [6]
NO3 + - + [6]
Urea + + + [6, 21]
  1. aBefore filling gaps; bAfter filling gaps. To make the GSMM consistent with experimental data, some missing reactions were added to model