Table 2 Percentages of reads mapping to the reference genome

Total reads

40462740

44233860

43540794

47325648

Total mapped

37182159 (91.89 %)

40670207 (91.94 %)

40389548 (92.76 %)

44003316 (92.98 %)

Multiple mapped

268916 (0.66 %)

284883 (0.64 %)

517276 (1.19 %)

437468 (0.92 %)

Uniquely mapped

36913243 (91.23 %)

40385324 (91.3 %)

39872272 (91.57 %)

43565848 (92.06 %)

Read-1

18514101 (45.76 %)

20278703 (45.84 %)

19998128 (45.93 %)

21861625 (46.19 %)

Read-2

18399142 (45.47 %)

20106621 (45.46 %)

19874144 (45.64 %)

21704223 (45.86 %)

Reads map to ‘ + ’

18438317(45.57 %)

20164702 (45.59 %)

19923475 (45.76 %)

21777326 (46.02 %)

Reads map to ‘-’

18474926 (45.66 %)

20220622 (45.71 %)

19948797 (45.82 %)

21788522 (46.04 %)

Non-splice reads

30579359 (75.57 %)

33256246 (75.18 %)

33435379 (76.79 %)

36873244 (77.91 %)

Splice reads

6333884 (15.65 %)

7129078 (16.12 %)

6436893 (14.78 %)

6692604 (14.14 %)