Table 1 General description of pig C. pecorum L1, L17 and L71 samples and their genomes

Host disease

Pneumonia

Pneumonia

Polyarthritis

Tissue isolated from

Lung

Lung

Joint

Year of isolation

1969

1969

1969

Country

Austria

Austria

Austria

C. pecorum load and amount of DNA

2.15 X 10⁶ copies/μl; 1000 ng

2 X 10⁶ copies/μl; 1000 ng

1.5 X 10⁶ copies/μl; 1000 ng

Total No. of filtered reads

48 485 057

41 185 214

42 490 870

Av. filtered read length

95.1

95.4

95.1

Total No. of filtered reads for de novo assembly

38 807 222 (80 %)

31 115 875 (76 %)

32 594 606 (77 %)

Contigs

5 (9.7 – 623 Kbp)

3 (10–790 Kbp)

5 (11.9 –780 Kbp)

N50

623 872

293 736

780 721

Av. read depth

2569X

1800X

3020X

Genome size (bp)

1 106 140

1 106 210

1 115 012

No. of predicted CDS

1007

1002

1002

% GC

41.1 %

42 %

41.1 %

Plasmid

Yes (7.5 Kbp)

No

No

Tryptophan operon

Present (TrpABFCDR, kynU, prsA)

Present (TrpABFCDR, kynU, prsA)

Present (TrpABFCDR, kynU, prsA)

Biotin and pyrimidine genes

Present (bioBFDA; pyrEHG, ndk)

Present (bioBFDA; pyrEHG, ndk)

Present (bioBFDA; pyrEHG, ndk)

Accession numbers

LFRH01000000

LFRK01000000

LFRL01000000