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Table 1 General description of pig C. pecorum L1, L17 and L71 samples and their genomes

From: Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

  L1 L17 L71
Host disease Pneumonia Pneumonia Polyarthritis
Tissue isolated from Lung Lung Joint
Year of isolation 1969 1969 1969
Country Austria Austria Austria
C. pecorum load and amount of DNA 2.15 X 106 copies/μl; 1000 ng 2 X 106 copies/μl; 1000 ng 1.5 X 106 copies/μl; 1000 ng
Total No. of filtered reads 48 485 057 41 185 214 42 490 870
Av. filtered read length 95.1 95.4 95.1
Total No. of filtered reads for de novo assembly 38 807 222 (80 %) 31 115 875 (76 %) 32 594 606 (77 %)
Contigs 5 (9.7 – 623 Kbp) 3 (10–790 Kbp) 5 (11.9 –780 Kbp)
N50 623 872 293 736 780 721
Av. read depth 2569X 1800X 3020X
Genome size (bp) 1 106 140 1 106 210 1 115 012
No. of predicted CDS 1007 1002 1002
% GC 41.1 % 42 % 41.1 %
Plasmid Yes (7.5 Kbp) No No
Tryptophan operon Present (TrpABFCDR, kynU, prsA) Present (TrpABFCDR, kynU, prsA) Present (TrpABFCDR, kynU, prsA)
Biotin and pyrimidine genes Present (bioBFDA; pyrEHG, ndk) Present (bioBFDA; pyrEHG, ndk) Present (bioBFDA; pyrEHG, ndk)
Accession numbers LFRH01000000 LFRK01000000 LFRL01000000