Table 2 List of MITE clusters that belong to the Tc1-mariner superfamily. Only clusters with at least one sublineage may represent bona fide MITEs. (a) independent copy number (b) minimum and maximum size are given
From: Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus
Clusters | Copy number (a) | Sub lineages | Confirmed family | Partner in Rhodnius genome | Size (b) | TSD and TIRs | Remarks |
|---|---|---|---|---|---|---|---|
MITE_9 | 118 | No | mariner | Rpmar0 | 299-845 | TACGAGGGTCGTTTGAAAAGTCCGTG | Internal deletions |
MITE_95 | 16 | 3 | mariner | Rpmar10 | 482-803 | TACGAGGGGCACTATTTATATTTTGAG | |
MITE_147/170 | 11 | No | mariner | Rpmar63 | 172-743 | TACGAGGTGTGGCTATTAAATAACGAGACT | Internal deletions |
MITE_100 | 68 | 1 | Tc1-like | No | 560 | TACACTGATGGACAAAATTAACGCACCACC | |
MITE_109 | 37 | 3 | Tigger-like | No | 300-647 | TACAGTGGTACCTCGGTTTTCGAA | |
MITE_120 | 174 | 3 | Tigger-like | No | 282-649 | TACAGTGGAGTCTCGGTTATCCGT | |
MITE_51 | 70 | 2 | Tigger-like | No | 307-796 | TACAGTACAACCTCGAT | |
MITE_125 | 28 | 3 | Tigger-like | No | 402-743 | TACAGTAGACTCTCAGAAATCCGG | |
MITE_185 | 11 | 3 | Tigger-like | No | 274-312 | TACAGTAAGACCCCGCTTAACGCG | Putative HT |
MITE_113 | 11 | 1 | Tc1-like | No | 522-556 | TACAGGGGGTGGACAAAAAAATGGAAACAC | |
MITE_83.0 | 11 | ? | Tc1-like ? | No | 489-1073 | TACAGGGTGACCAGAGTTATATGCTCCACCCACTTTTTT | |
MITE_260.1 | 38 | 2 | IS630 | Tc1_Rpmar24 | 91 | TATAGCCAAGCGACA | Prokaryote |