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Table 1 Assembly statistics

From: De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis

Total number of contigs

52,549

Transcriptome size(nt)

101,106,695

Longest contig

25617

Shortest contig

301

Average contigs length(nt)

1,924

N50(nt)

2,294

Total number of ORF

25,555

Average ORF length(nt)

1578.5

Longest ORF(nt)

11,322

Shortest ORF(nt)

300

  1. The assemblathon_stats perl scripts version 2 and ORF_finder were used to compute assembly statistics
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BMC Genomics

ISSN: 1471-2164

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