Table 4 Known G. hirsutum miRNAs identified in each library
miRNA family | miRNA | miRNA sequence | RPM | Log2 | |||
|---|---|---|---|---|---|---|---|
A1 | A9 | A3 | A1–A9 | A3–A9 | |||
miR156 | ghr-miR156a | UGACAGAAGAGAGUGAGCAC | 19.85 | 38.84 | 9.29 | −0.97 | −2.06 |
miR162 | ghr-miR162a | UCGAUAAACCUCUGCAUCCAG | 1,830.80 | 364.61 | 126.20 | 2.33 | −1.53 |
miR164 | ghr-miR164a | UGGAGAAGCAGGGCACGUGCA | 937.47 | 261.57 | 37.59 | 1.84 | −2.80 |
miR166 | ghr-miR166a | UCGGACCAGGCUUCAUUCCCC | 143,209.00 | 199,713.00 | 57,708.00 | −0.48 | −1.79 |
miR167 | ghr-miR167a | UGAAGCUGCCAGCAUGAUCUA | 127.99 | 47.78 | 12.16 | 1.42 | −1.97 |
miR171 | ghr-miR479 | CGUGAUAUUGGUUCGGCUCAUC | 4.73 | 0.01 | 0.01 | 8.88 | 0.00 |
miR2949 | ghr-miR2949b | UCUUUUGAACUGGAUUUGCCGA | 14.18 | 5.94 | 1.11 | 1.25 | −2.43 |
ghr-miR2949a-5p | ACUUUUGAACUGGAUUUGCCGA | 3,331.60 | 529.09 | 226.60 | 2.65 | −1.22 | |
| Â | ghr-miR2949a-3p | UGCAAAUCCAGUCAAAAGUUA | 4.73 | 0.01 | 0.01 | 8.88 | 0.00 |
miR390 | ghr-miR390a | AAGCUCAGGAGGGAUAGCGCC | 5,177.80 | 1,886.50 | 314.00 | 1.46 | −2.59 |
miR393 | ghr-miR393b-5p | UCCAAAGGGAUCGCAUUGAUCU | 13.71 | 1.59 | 1.99 | 3.11 | 0.33 |
miR394 | ghr-miR394a | UUGGCAUUCUGUCCACCUCC | 1,387.00 | 340.84 | 95.08 | 2.02 | −1.84 |
miR396 | ghr-miR396a | UUCCACAGCUUUCUUGAACUG | 1,723.00 | 131.18 | 35.93 | 3.72 | −1.87 |
miR399 | ghr-miR399d | UGCCAAAGGAGAUUUGCCCCG | 326.08 | 35.67 | 17.69 | 3.19 | −1.01 |
| Â | ghr-miR399a | UGCCAAAGGAGAUUUGCCCUG | 127.59 | 0.01 | 9.95 | 13.64 | 9.96 |
miR482 | ghr-miR482b | UCUUGCCUACUCCACCCAUGCC | 3,962.50 | 3,436.10 | 621.30 | 0.21 | −2.47 |
|  | ghr-miR482a | UCUUUCCUACUCCUCCCAUACC | 5,487.80 | 1,597.20 | 556.10 | 1.78 | −1.52 |
| Â | ghr-miR2948-5p | UGUGGGAGAGUUGGGCAAGAAU | 1,984.80 | 499.36 | 1,00 | 1.99 | 1.00 |
miR827 | ghr-miR827 | UUAGAUGACCAUCAACAAACA | 5,536.26 | 2,675.20 | 981.00 | 1.05 | −1.45 |
miR3476 | ghr-miR3476-5p | UGAACUGGGUUUGUUGGCUGC | 2,384.10 | 2,096.50 | 1.442.00 | 0.19 | −0.54 |