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Table 1 Statistics of sequencing and read mapping for each chicken

From: Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Chickena Line Raw reads After QC (Ratio, %) Mapped reads (Ratio, %) Q20 Reads (Ratio, %) Effective depth (X)b Q20 Coverageb (%)
RES1 63 205,596,588 187,877,511(91.3) 186,810,961(99.4) 176,987,396(94.2) 16.8 94.8
RES2 63 234,886,526 207,580,222(88.4) 206,152,608(99.3) 193,530,549(93.2) 18.4 95.0
RES3 63 286,301,462 256,953,147(89.8) 255,430,372(99.4) 241,909,593(94.1) 23.5 95.0
SUS1 72 233,281,700 213,717,896(91.6) 212,018,941(99.2) 195,175,544(91.3) 18.6 95.4
SUS2 72 222,031,616 204,055,933(91.9) 202,806,267(99.4) 190,921,220(93.6) 18.2 95.3
SUS3 72 236,881,356 220,680,041(93.2) 219,476,108(99.5) 207,828,724(94.2) 19.8 94.9
  1. a RES resistant, SUS susceptible; b Calculated based on Q20 reads