Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Table 3 Line-specific CNVRs on GGA16

CNVR ID	Start	End	Size (bp)	Status	Line	Sample	Overlap CNVs	Overlap genes
CNVR4435	107501	108600	1100	Loss	7₂	SUS1	NA	ENSGALT00000000188
CNVR4437	161801	163800	2000	Loss	7₂	SUS1	NA	ENSGALT00000044422;
								ENSGALT00000045456;
								ENSGALT00000045935;
								ENSGALT00000042650
CNVR4438	171001	172600	1600	Loss	7₂	SUS1	NA	NA
CNVR4439	177101	179200	2100	Loss	7₂	SUS1;SUS2	NA	ENSGALT00000000149
CNVR4441	186601	189200	2600	Loss	6₃	RES1	NA	ENSGALT00000000149
CNVR4444	235134	251820	16687	Loss	7₂	SUS1	Crooijmans et al. [30]	ENSGALT00000003794;
CNVR4444	235134	251820	16687	Loss	7₂	SUS1	Crooijmans et al. [30]	ENSGALT00000043371
CNVR4447	402401	405200	2800	Loss	7₂	SUS3	Crooijmans et al. [30]; Luo et al. [31]	ENSGALT00000001702
CNVR4448	408901	412800	3900	Gain	6₃	RES1	Crooijmans et al. [30]; Luo et al. [31]	ENSGALT00000041340

ISSN: 1471-2164