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Table 2 Wolbachia Transcriptome and Proteome Coverage in D. immitis Tissues

From: Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Sample wDi mapped reads wDi mapped bases (millions) Average coverage (FPKM)/transcript % of all predicted wDi transcripts detecteda Number of wDi proteins detected
FBW 304,004 21.9 229.5 90 134 161
92
443,364 31.9
59
FU 15,109 1.1 922.0 69 33
82,897 6.0
FH 308,412 22.2 216.3 86 34
202,058 14.5
FI 1152 0.08 1627.3 7.1 0
MBW 440,851 22.0 621.5 97 -
337,307 16.9
MI 1111 0.05 1536.2 10 -
MT 264 0.01 1367.9 8.3 -
MS - - - - 0
MH - - - - 62
  1. a Based on number of transcripts expressed (FPKM >0) per life cycle stage. Values from each biological replicate (tissue samples from different worms) analyzed by each method are presented. Values from each biological replicate (tissue samples from different worms) analyzed by each method are presented. Technical replicates were pooled prior to further analysis. Total number of unique proteins identified are presented for each tissue (bracketed for FBW biological replicates)
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