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Table 3 Genes in the un-mapped read assemblies that were different between S10-P3 and S10-P9

From: Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits

Gene ID

Blast tophit (organism)

E-value

Coverage (%)

GO annotation

Signal-P

Genes present in S10-P3 and absent in S10-P9

g53.t1_Ip1476*

db module family protein

2.45E-33

65.7

F: transferase activity; F: transferase activity, transferring acyl groups other than amino-acyl groups; F: transferase activity, transferring acyl groups

 

g126.t1_Ip1476*

dna helicase

1.51E-06

50.4

F: helicase activity; C: chloroplast envelope; C: chloroplast; F: ATP binding; F: nucleotide binding; F: nucleoside-triphosphatase activity; F: nucleic acid binding; F:ATP-dependent 5’-3’ DNA helicase activity; C: plastid

 

g80.t1_Ip1475

Integrase domain-containing protein

5.90E-17

59.45

F: binding

 

Genes present in S10-P9 and absent in S10-P3

g5.t1_Ip1474

No hit

    

g129.t1_Ip1474

Protein isoform a

4.33E-10

42.7

F: N-acetyltransferase activity; P: embryo development ending in birth or egg hatching

 

g131.t1_Ip1475

Cysteine proteinase rd19a-like

8.24E-07

55.45

P: proteolysis; F: hydrolase activity; F: cysteine-type peptidase activity; F: peptidase activity

SignalP-noTM (EUK)

g17.t1_Ip1477*

Syntaxin and target snare coiled-coil region domain-containing protein

2.30E-42

59.15

P: transport; P: cell-cell signaling; P: biological process

 

g27.t1_Ip1477

wd repeat-containing protein 5

3.98E-174

83.2

P: multicellular organismal development; F: transferase activity; C: nucleoplasm; C: protein complex;; P: regulation of biological process; P: cellular protein modification process; P: organelle organization; F: protein binding

 

g29.t1_Ip1477

Transthyretin domain-containing protein

2.46E-32

61.95

C: integral to membrane; C: extracellular space

SignalP-noTM (EUK)

g77.t1_Ip1477*

No hit

-

-

-

 

g87.t1_Ip1477*

No hit

-

-

-

 

g112.t1_Ip1477*

No hit

-

-

-

 
  1. *: genes unique to the specified sample, -: no information available