Skip to main content

Table 1 Targeting constructs used in this study

From: DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs

Targeted gene

Length of cut

Position to TSS

Target region

Expected PCR size (WT)(bp)

Expected PCR size (KO)(bp)

MALAT1_A

100 bp

−70/+30

Upstream TSS

278

166

MALAT1_B

500 bp

−400/+100

Upstream TSS

641

123

MALAT1_C

600 bp

−430/+240

Major TSS

871

148

MALAT1_D

600 bp

−450/+260

Major TSS

871

109

MALAT1_E

3000 bp

−500/+2500

Both TSS

3249

224

UCA1

500 bp

−480/+160

 

819

181

TFRC_A

100 bp

−70/+30

 

215

97

TFRC_B

500 bp

−400/+100

 

637

141

TFRC_C

1000 bp

−700/+300

 

1240

239