|
#position
|
Gene
|
Variant and total reads per individual
|
Nucleotide change
|
Ts or Tv
|
#codon
|
Codon change
|
Aminoacid change
|
Effect
|
|---|
|
AUS4
|
AUS5
|
AUS7
|
|---|
|
4105
|
ND2
| |
2/167
| |
C to A
|
Tv
|
22
|
TCG to TAG
|
Ser to STOP
|
Nonsense
|
|
5690
|
COI
|
2/74
| | |
T to A
|
Tv
|
75
|
ATT to AAA
|
Ile to Met
|
Non-synonymous
|
|
6245
|
COI
|
2/153
|
3/171
| |
C to A
|
Tv
|
260
|
TAC to TAA
|
Tyr to STOP
|
Nonsense
|
|
7561
|
COII
| |
2/109
| |
G to T
|
Tv
|
131
|
GGC to GTC
|
Gly to Val
|
Non-synonymous
|
|
10220
|
ND3
|
2/151
| | |
A to G
|
Ts
|
109
|
CAA to CAG
|
Gln to Gln
|
Synonymous
|
|
11804
|
ND4
|
2/151
| | |
G to T
|
Tv
|
401
|
GGG to GGT
|
Gly to Gly
|
Synonymous
|
|
12505
|
ND5
| |
2/191
| |
T to C
|
Ts
|
103
|
TCT to CCT
|
Ser to Pro
|
Non-synonymous
|
|
12764
|
ND5
| |
2/108
| |
C to T
|
Ts
|
189
|
GCC to GCT
|
Ala to Ala
|
Synonymous
|
|
12962
|
ND5
| |
2/85
| |
G to T
|
Tv
|
255
|
AGC to ATC
|
Ser to Ile
|
Non-synonymous
|
|
15735
|
Cytb
|
44/93
|
35/90
|
15/53
|
T to C
|
Ts
|
368
|
TTT to CTT
|
Phe to Leu
|
Non-synonymous
|
- Reads were mapped against the reference genome AUS7. The number of reads carrying the variant is shown together with total number the reads mapping to each position (variant reads/total reads)
