Skip to main content

Table 8 The inferred contents of exosomes, P -bodies, and stress granules in Plasmodium species. The composition of RNA granules in Plasmodium was inferred by conducting BLASTp queries using the amino acid sequences of components of exosomes, P bodies, and stress granules from model organisms (D. melanogaster, S. cerevisiae, C. elegans) against known and predicted Plasmodium amino acid sequences. Other Plasmodium proteins that traffic to granules, but that cannot be definitively placed in a currently annotated granule type, are listed separately. Gene identifiers for these proteins for three commonly studied malaria species (P. falciparum, P. vivax, P. yoelii) were obtained from PlasmoDB.org

From: A bioinformatic survey of RNA-binding proteins in Plasmodium

Exosome

P. falciparum Gene ID

P. vivax Gene ID

P. yoelii Gene ID

Csl4

PF3D7_0720000

PVX_096320

PY17X_0620200

Rrp4

PF3D7_0410400

PVX_000730

PY17X_1009400

Rrp40

PF3D7_1307000

PVX_122185

PY17X_1407200

Rrp41

PF3D7_1427800

PVX_085150

PY17X_1018300

Rrp42

PF3D7_1340100

PVX_082925

PY17X_1358900

Rrp45

PF3D7_1364500

PVX_115185

PY17X_1141800

Rrp6

PF3D7_1449700

PVX_118000

PY17X_1317200

Rrp44/Dis3

PF3D7_1359300

PVX_114935

PY17X_1137100

Mpp6 (Accessory)

PF3D7_0928900

PVX_099895

PY17X_0833000

RNaseII

PF3D7_0906000

PVX_098745

PY17X_0418100

P Bodies

P. falciparum Gene ID

P. vivax Gene ID

P. yoelii Gene ID

BRF1

PF3D7_1449300

PVX_118025

PY17X_1316800

NOT1

PF3D7_1103800

PVX_090876,

PY17X_0945600

  

PVX_090878

 

HCCR4-Like

PF3D7_0519500

PVX_080270

PY17X_1237700

CAF1

PF3D7_0811300

PVX_123205

PY17X_1428300

CNOT3

PF3D7_1006100

PVX_094500

PY17X_1207500

CNOT2

PF3D7_1128600

PVX_092050

PY17X_0921700

CNOT4

PF3D7_1235300

PVX_100715

PY17X_1452400

ABCA10

PF3D7_1434000

PVX_084835

PY17X_1012400

NOT9

PF3D7_0507600

PVX_097940

PY17X_1108300

NOTx

PF3D7_1417200

PVX_085590

PY17X_1027900

DCP1

PF3D7_1032100

PVX_111120

PY17X_0517000

DCP2

PF3D7_1308900

PVX_122275

PY17X_1409100

EIF3

PF3D7_0517700

PVX_080365

PY17X_1235900

eIF4E

PF3D7_0315100

PVX_095480

PY17X_0415700

eIF4G

PF3D7_1312900

PVX_122470

PY17X_1413100

eRF1

PF3D7_0212300

PVX_002915

PY17X_0309700

eRF3

PF3D7_1123400

PVX_091785

PY17X_0926900

LSM1

PF3D7_1124400

PVX_091835

PY17X_0925900

LSM2

PF3D7_0520300

PVX_080230

PY17X_1238500

LSM3

PF3D7_0819900

PVX_089370

PY17X_0711100

LSM4

PF3D7_1107000

PVX_091025

PY17X_0942400

LSM5

PF3D7_1443300

PVX_118325

PY17X_1311000

LSM6

PF3D7_1325000

PVX_116625

PY17X_1344900

LSM7

PF3D7_1209200

PVX_084490

PY17X_0610100

Pab1

PF3D7_1224300

PVX_123845

PY17X_1441700

Rpb4

PF3D7_1404000

PVX_086235

PY17X_1040500

Rbp7

PF3D7_1104700.1,

PVX_090915

PY17X_0944700

 

PF3D7_1104700.2

  

Sbp1

PF3D7_0501300

PVX_097583

 

Upf1

PF3D7_1005500

PVX_094465

PY17X_1206900

Upf2

PF3D7_0925800

PVX_099705

PY17X_0829900

Upf3B

PF3D7_1327700

PVX_116495

PY17X_1347600

XRN1

PF3D7_1106300

PVX_098910

PY17X_0943100

RBP1

PF3D7_0414500

PVX_089680

PY17X_0716700

DCS2

PF3D7_1436900

PVX_084695

PY17X_0614400

APOBEC3G

PF3D7_1349400

PVX_083365

PY17X_1367900

Stress Granules

P. falciparum Gene ID

P. vivax Gene ID

P. yoelii Gene ID

Ataxin-2

PF3D7_1435700.1

PVX_084750

PY17X_1010700

eIF4E

PF3D7_0315100

PVX_095480

PY17X_0415700

Rpb4

PF3D7_1404000

PVX_086235

PY17X_1040500

SMN

PF3D7_0323500

PVX_095050

PY17X_1218200

eIF4A

PF3D7_1468700

PVX_117030

PY17X_1336600

PABP

PF3D7_1224300

PVX_123845

PY17X_1441700

eIF2

PF3D7_0322400

PVX_095115

PY17X_1219300

Other?

P. falciparum Gene ID

P. vivax Gene ID

P. yoelii Gene ID

RAP55 (CITH)

PF3D7_1474900

PVX_118625

PY17X_1304900

RCK/p54 (DOZI)

PF3D7_0320800

PVX_095195

PY17X_1220900

Puf2

PF3D7_0417100

PVX_089945

PY17X_0719200

ALBA1

PF3D7_0814200

PVX_123060

PY17X_1425300

ALBA2

PF3D7_1346300

PVX_083215

PY17X_1364900

ALBA3

PF3D7_1006200

PVX_094505

PY17X_1207600

ALBA4

PF3D7_1347500

PVX_083270

PY17X_1366000