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Table 2 The Gene-Chip and ChIP-seq agreement

From: The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine

Affymetrix ID

Official gene name

FC Gene Chip

FC Chip-Seq

Official gene symbol, full description

17550548

Acsm2

2.1

1.2

Acyl-coa synthetase medium-chain family member 2

17205319

Cox18

1.8

1.1

cytochrome c oxidase assembly protein 18

17200441

Dhrs1

1.7

1.1

Dehydrogenase/reductase (SDR family) member 1

17205257

Gbf1

1.6

1.2

Golgi-specific brefeldin A-resistance factor 1

17202563

MrpL27

1.5

1.2

Mitochondrial ribosomal protein L27

17205437

Arfgef1

1.6

1.2

ADP-ribosylation factor guanine nucleotide-exchange factor 1

17201149

Xpo7

1.5

1.4

Exportin 7; similar to Ran-binding protein 16

17308165

Entpd4

0.4

0.6

Ectonucleoside triphosphate diphosphohydrolase 4

17449641

G3bp2

1.5

1.2

Gtpase activating protein (SH3 domain) binding protein 2

17308149

Gm16677

0.6

0.6

Predicted gene 16677

17548436

Gm17019

2.1

3.7

Predicted gene 17019

17203369

Sar1a

1.6

1.1

SAR1 gene homolog A (S. Cerevisiae)

17515315

Ldlr

0.7

0.8

Low density lipoprotein receptor

17500195

Star

0.6

0.7

Steroidogenic acute regulatory protein

17201763

Nmt1

1.6

1.1

N-myristoyltransferase 1

17203277

Psma1

1.5

1.1

Proteasome (prosome, macropain) subunit, alpha type 1

17453132

Psph

0.6

0.9

Phosphoserine phosphatase

17323063

Rrn3

1.6

1.1

RRN3 RNA polymerase I transcription factor homolog (yeast)

17445634

Gm9758

1.8

3.1

Spermatogenesis associated glutamate (E)-rich protein 4e

17446524

Speer4b

1.6

1.4

Spermatogenesis associated glutamate (E)-rich protein 4b

17445689

Speer4c

1.5

1.5

Spermatogenesis associated glutamate (E)-rich protein 4e

17445673

Speer4e

2

6

Spermatogenesis associated glutamate (E)-rich protein 4e

17434884

Speer7-ps1

2.1

6.2

Spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1

17434864

Speer8-ps1

1.8

2.4

Spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1

17529481

Tbx18

0.6

0.8

T-box18

17201539

Kif18b

1.6

1.1

Kinesin family member 18B

17401007

Trim45

1.9

2.4

Tripartite motif-containing 45

17535269

1700020N15Rik

0.6

1.2

RIKEN cdna 1700020 N15 gene

17201329

Ccdc103

0.6

1.2

Coiled-coil domain containing 103

17207313

Cpsf7

0.7

1.2

Cleavage and polyadenylation specific factor 7

17201293

Eftud2

0.6

1.2

Elongation factor Tu GTP binding domain containing 2

17206471

Eif5

0.6

1.2

Similar to Eukaryotic translation initiation factor 5

17448749

Fryl

0.6

1.2

Furry homolog-like (Drosophila)

17208347

Hdac5

1.5

1

Histone deacetylase 5

17538773

Huwe1

0.6

1

HECT, UBA and WWE domain containing 1

17546762

Mid1

0.6

1.5

Similar to midline 1

17207105

Pkd1

0.7

1

Polycystic kidney disease 1 homolog

17202313

Psap

1.7

1

Prosaposin

17204631

Smim7

1.8

0.9

Small integral membrane protein 7

17438319

Tmem165

0.6

1.1

Transmembrane protein 165

17392600

9230104L09Rik

0.5

ND

RIKEN cdna 9230104 L09 gene

17290163

Ccl28

1.6

ND

Chemokine (C-C motif) ligand 28

17413061

Gm5859

0.5

ND

Similar to 4933409K07Rik protein

17477347

Klk1b22

1.8

ND

Kallikrein 1-related peptidase b22

17233226

Lilrb4

0.6

ND

Glycoprotein 49 A; leukocyte immunoglobulin-like receptor, subfamily B, member 4

17532649

Nd6

2.3

ND

NADH dehydrogenase subunit 6