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Table 1 Number of repetitive elements contained in the 10 kb of sequence up- and downstream of the copy-number variable regions (CNVRs) in the apple genome

From: The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

CNVR flanking Regions Non-CNV flanking regions
Repeat type Observed Expected Observed Expected P-value
Gypsy 1917 2087.5 85,346 85175.5 0.007
Copia 815 707.7 28,767 28874.3 0.006
Cassandra 245 225.2 9169 9188.8 0.375
LINE/RTE 264 251.5 10,250 10262.5 0.624
hAT 402 350.6 14,253 14304.4 0.065
Total 3643 3622.4 147,785 147805.6 0.812