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Table 1 Number of repetitive elements contained in the 10 kb of sequence up- and downstream of the copy-number variable regions (CNVRs) in the apple genome

From: The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

CNVR flanking Regions

Non-CNV flanking regions

Repeat type

Observed

Expected

Observed

Expected

P-value

Gypsy

1917

2087.5

85,346

85175.5

0.007

Copia

815

707.7

28,767

28874.3

0.006

Cassandra

245

225.2

9169

9188.8

0.375

LINE/RTE

264

251.5

10,250

10262.5

0.624

hAT

402

350.6

14,253

14304.4

0.065

Total

3643

3622.4

147,785

147805.6

0.812

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BMC Genomics

ISSN: 1471-2164

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