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Table 1 Sequencing results and read alignment

From: Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq

Samples Library Reads Reads after filtered Mapped reads Uniq mapped reads Post-processed Bisulfite conversion rates CpG coverage %
Fayoumi replicate 1 A 175421846 159533236 144001914 114988172 101197098 99.21 % 83.72 %
  B 175900866 151260322 118878023 79759740 68021164   
Fayoumi replicate 2 A 172418670 153201632 135605330 108313076 94229642 99.24 % 85.01 %
  B 170400106 151853856 127905703 96985346 85265402   
  All 694141488 615849046 526390970 400046334 348713306   
Leghorn replicate 1 A 200045434 178899768 160144382 126118192 87060156 99.33 % 86.92 %
  B 156119182 136244806 122471089 98190500 88847236   
Leghorn replicate 2 A 516069410 448675100 299761294 126087800 37391344 99.40 % 91.57 %
  B 293866348 268269302 239807905 191655228 151160202   
  All 1166100374 1032088976 822184670 542051720 364458938   
  1. The chicken reference genome was downloaded from UCSC database (http://genome.ucsc.edu) Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)