Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq

BMC Genomics

Table 1 Sequencing results and read alignment

Samples	Library	Reads	Reads after filtered	Mapped reads	Uniq mapped reads	Post-processed	Bisulfite conversion rates	CpG coverage %
Fayoumi replicate 1	A	175421846	159533236	144001914	114988172	101197098	99.21 %	83.72 %
	B	175900866	151260322	118878023	79759740	68021164
Fayoumi replicate 2	A	172418670	153201632	135605330	108313076	94229642	99.24 %	85.01 %
	B	170400106	151853856	127905703	96985346	85265402
	All	694141488	615849046	526390970	400046334	348713306
Leghorn replicate 1	A	200045434	178899768	160144382	126118192	87060156	99.33 %	86.92 %
	B	156119182	136244806	122471089	98190500	88847236
Leghorn replicate 2	A	516069410	448675100	299761294	126087800	37391344	99.40 %	91.57 %
	B	293866348	268269302	239807905	191655228	151160202
	All	1166100374	1032088976	822184670	542051720	364458938

The chicken reference genome was downloaded from UCSC database (http://genome.ucsc.edu) Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4)

ISSN: 1471-2164