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Table 1 Whole exome sequencing mean target coverage depth and percent target coverage statistics of replicate and aggregate data

From: Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data

WES sample

Mean target depth

% Target ≥1x

% Target ≥10x

% Target ≥20x

ID3866

    

 Replicate 1

68x

96.2

91.5

86.6

 Replicate 2

65x

96.3

91.9

87.3

 Replicate 3

71x

96.4

92.3

88.3

 Mean ± SE

 

96.3 ± 0.1

91.9 ± 0.4

87.4 ± 0.8

Aggregate

205x

97.6

95.1

93.8

ID4382

    

 Replicate 1

69x

96.5

92.1

87.8

 Replicate 2

61x

96.3

91.6

85.8

 Replicate 3

63x

96.3

91.7

86.4

 Mean ± SE

 

96.4 ± 0.1

91.8 ± 0.4

86.7 ± 1.0

Aggregate

193x

97.7

95.3

93.9

ID4384

    

 Replicate 1

56x

96.0

90.5

83.5

 Replicate 2

68x

96.3

92.0

87.4

 Replicate 3

83x

96.5

92.7

89.4

 Mean ± SE

 

96.3 ± 0.3

91.7 ± 1.2

86.8 ± 3.0

Aggregate

208x

97.6

95.1

93.8

ID4385

    

 Replicate 1

51x

96.2

90.3

83.1

 Replicate 2

86x

96.7

92.9

89.6

 Replicate 3

61x

96.3

91.6

85.7

 Mean ± SE

 

96.4 ± 0.2

91.6 ± 1.3

86.1 ± 3.2

Aggregate

198x

97.7

95.3

93.9

ID4386

    

 Replicate 1

64x

96.4

91.6

86.8

 Replicate 2

69x

96.3

91.9

87.4

 Replicate 3

49x

96.0

90.3

82.1

 Mean ± SE

 

96.2 ± 0.2

91.2 ± 0.8

85.4 ± 2.9

Aggregate

182x

97.6

94.9

93.5

ID4606

    

 Replicate 1

77x

96.5

92.1

87.8

 Replicate 2

48x

96.0

90.1

81.2

 Replicate 3

55x

96.2

90.9

83.7

 Mean ± SE

 

96.2 ± 0.2

91.0 ± 1.0

84.2 ± 3.3

Aggregate

179x

97.5

95.0

93.5