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Table 2 Transcript distribution among different classes of significantly changed transcripts

From: Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

Transcript classes Transcript number Significantly changed
Known (=) 39,101 13,398
Novel splice junction (j) 57,376 2,840
Overlapped (o) 1,689 252
Antisense exon (x) 2,266 242
Antisense intron (s) 599 30
Intergenic 2,075 419
Total 103,106 17,181
  1. Cuffdiff2 was used for time-course differential expression analysis at isoform level. Transcripts that were differentially expressed at least at one time point compared with previous time point with FDR < 0.05 were defined as significantly differentially expressed. Out of 103,106 transcripts detected in developing soybean embryos, 17,181 transcripts were significantly changed