Molecular tools for studying the major malaria vector Anopheles funestus: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis

Table 2 Tag counts for ten putative rRNA genes

GeneID	Description	Tag count, F1_XP_RZ	Tag count, F1_XP_PA	Tag count, F1_RZ	Tag count, F1_PA	Tag count, F2_RZ	Tag count, F2_PA	Tag count, F3_RZ	Tag count, F3_PA
AFUN015486	28S	20,426	10,311	120,345	16,664	19,706	28,057	95,593	20,651
AFUN015548	28S	47,771	21,402	154,805	31,516	48,525	54,305	145,807	41,643
AFUN015372	18S	3,064	4,289	24,027	4,787	6,759	8,400	17,239	6,504
AFUN015629	5.8S	0	0	0	0	1	0	0	0
AFUN015410	5.8S	13	6	6	1	0	3	4	5
AFUN015687	5.8S	0	0	0	0	0	0	0	0
AFUN015706	5.8S	0	0	0	0	0	0	0	0
AFUN015471	5.8S	1	0	0	0	0	0	0	0
16S-rRNA	16S (mito.)	768,823	2,673,376	402,555	2,351,745	272,148	1,927,215	491,163	2,382,882
12S-rRNA	12S (mito.)	51,260	6,613	20,543	7,110	10,995	3,066	21,513	3,032
Total (%)^a		891,358 (3.86 %)	2,715,997 (11.17 %)	722,281 (5.49 %)	2,411,823 (10.34 %)	358,134 (2.42 %)	2,021,046 (9.20 %)	771,319 (4.78 %)	2,454,717 (11.28 %)

ISSN: 1471-2164