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Table 2 Primers used in QPCR studies

From: Transcriptome profiling reveals that feeding wild zooplankton to larval Atlantic cod (Gadus morhua) influences suites of genes involved in oxidation-reduction, mitosis, and selenium homeostasis

Gene name

Primer name

Nucleotide sequence (5′-3′)

Efficiency (%)a

Amplicon size (bp)

coagulation factor V

36536-1F

GGGAACACGGATAACAATGG

103.4

132

36536-1R

AAAGTCACAGCCGAGCAACT

dehydrogenase/reductase SDR family member 1

36829-1F

GTCTTGATGACCTGCGACCT

85.0

110

36829-1R

AGGTAAGGGACCTGGGACAC

glutathione peroxidase 1b

37395-2F

TGCTTCAGAAGTCGGATGTG

101.6

135

37395-2R

AGACTGGGCTCCAGATGATG

cytochrome P450 CYP2Y3

37900-2F

CAGGAACGGAGACAACCAGT

105.0

109

37900-2R

ACCCAATGACAGAGGCAATC

microsomal glutathione S-transferase 3

38166-1F

TGATCGCCATGGATATGCTA

104.0

113

38166-1R

TGCACCCCCAACTTTTACTC

peroxiredoxin-1 (alias natural killer enhancing factor)

39283-1F

GTGCTTTCAGAGGGCTGTTC

100.7

146

39283-1R

GCACACTTCCCCGTATTTGT

DNA-damage-inducible transcript 4 (alias REDD1)

41986-1F

ACTGCTCACGTCACAAGGTG

99.7

118

41986-1R

GTTCCTAACGACGCTTCTGC

selenoprotein Pa

42046-1F

GGGCAGGGTCATGTAGAGAA

101.5

116

42046-1R

CTGGTCACTACTGGCCTGGT

solute carrier family 6, member 6

42481-2F

GTCTGAGGGACCTCTGATCG

101.4

102

42481-2R

AGCTCGCTGTCCTTCACAAT

thioredoxin-interacting protein

42540-2F

GGCGATGACGAAGTGTGTAA

91.7

111

42540-2R

TGGCTCACCTCCACGATTAT

trypsinogen H1_3a1

42811-2F

GACGCTGGACTACGACATCA

81.4

124

42811-2R

TCCAGACACGACACACTGGT

aurora kinase B

42084-2F

AGCCACTCGGAGACGTACAC

97.6

89

42084-2R

TTGGAGATCAGGTCCTTTGC

nattectin precursor

46230-1F

GGCATTGAGGCAGATAGAGG

98.9

150

46230-1R

TCAGACTGTGGGTCTTGCAG

ferritin, middle subunit

37201-1F

TGGCTTGGATTCCATAAAGC

107.7

102

37201-1R

GGTCAAAAGTGCTCCGTCAT

RNA polymerase II elongation factor ELL2

41953-2F

GCTTCCGCATAAAGACAAGG

93.8

150

41953-2R

GGATAACAGCGGCGTGTACT

  1. aAmplification efficiencies were calculated using a 5-point 1:3 dilution series starting with cDNA representing 10 ng of input RNA. See Methods for additional details