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Table 5 Copy numbers and gene names of CNVRs present in 5 or more individuals

From: Genomic population structure and prevalence of copy number variations in South African Nguni cattle

CNVR CNa Total GEN
0 1 3 4
chr17:73713062-74998349   8 13   21 CHCHD10 IGLL1 LOC527441 SLC5A1 VPREB3 ZNF280A ZNF280B ZNF70 DERL3 GSTT1 GSTT3 GSTT4 MIF SLC2A11 SMARCB1 DDT GGT1 GGT5 SUSD2 C17H22orf13 LOC531152 MIR2323 RTDR1 SNRPD3 SPECC1L UPB1
chr1:104798012-105264358   16 1   17 SI
chr24:28154039-28497174   13 3   16 CDH2
chr7:75305297-75370366 1 8 5   14 GABRG2
chr5:3260057-3434356   7 4 2 13 ATXN7L3B
chr6:43037439-43089739 12 1    13 GBA3
chr19:49657396-49784054   10 2   12 LYAR NSG1 OTOP1 STX18 TMEM128 WDR1 ZBTB49
chr6:108998175-109951981   5 7   12 NOT_FOUND
chr9:3651455-4439872   10 1 1 12 PECAM1 POLG2
chr1:32509969-32781614 1 7 3   11  
chr6:71910076-72118486    11   11 CHIC2
chr28:21101833-21762976   5 5   10 CTNNA3
chr22:59487979-60960603   8 1   9  
chr6:53514737-53692295   9    9 ACAD9 C22H3orf37 CNBP COPG1 EFCC1 GATA2 ISY1 MIR2374 RAB7A RPN1 EFCC1 IQSEC1 ISY1 CHCHD4 HDAC11 NUP210 TMEM43 WNT7A XPC
chr14:54875898-55141942    8   8 ANGPT1
chr25:41191025-42687812   5 3   8 BRAT1 CARD11 GNA12 GRIFIN LFNG MIR2390 MIR2890
  1. a double deletion (CN = 0), single deletion (CN = 1), single duplication (CN = 3) and double duplication (CN = 4)